Protein Info for mRNA_2686 in Rhodosporidium toruloides IFO0880

Name: 11054
Annotation: Interpro Fungal potassium channel 0

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 567 transmembrane" amino acids 36 to 60 (25 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 220 to 245 (26 residues), see Phobius details PF16944: KCH" amino acids 17 to 264 (248 residues), 289 bits, see alignment E=2.1e-90

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (567 amino acids)

>mRNA_2686 Interpro Fungal potassium channel 0 (Rhodosporidium toruloides IFO0880)
MCCSSAKWKREVVPDHKFDFIDVSQFRSRSCGSRLSFALSWFFFFISLAVYVADTYTLIA
LLASNRWSGQILQSEAAQGDTRSSNVLEVPFNIGKWIFFGCIVFSYLLLLWEARKARAIV
KSRDISYAFTNVMAHEWYALRSYDHHCFFGQIEESKKKKDSVAFWVFFTFKGWKRLLLCD
APRQVINAITLWSFGKSQKWTTDFGVYFSGSLIKKVALITMSYTVIIFAISAACLLVASV
IYVPLLCYIQGNLKEYCCHKVDKRIAELMKRKAKRRLKQERELEEREARGDFRHLKGRAP
RPQPTLPKIGLADDDLVSDVGSVRGEKYAPDSFGYPPSIPYGNSAPYGLSRHAPYPSTTD
VESLKGGQGYSYAESVSSLDGLAARGQPMGYEGSYAGSGLAAQSMSRLPSYRTNPSSGNL
PREIAYERDDRFVDYDAQEDLYGASGYQQYGQEYVPSPRDERRPGGRDEREREDGARYGD
KLASLDFSGTSYGQGYRSETPALDQSLASRTGEYHPPSRQNLYERAERHNNGSNAGHAGS
FSTAYGGAHGGAYGGAYGGWEESGPYR