Protein Info for mRNA_2707 in Rhodosporidium toruloides IFO0880

Name: 11075
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 578 transmembrane" amino acids 62 to 79 (18 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 141 to 159 (19 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 325 to 344 (20 residues), see Phobius details amino acids 364 to 381 (18 residues), see Phobius details amino acids 388 to 408 (21 residues), see Phobius details amino acids 420 to 443 (24 residues), see Phobius details amino acids 455 to 478 (24 residues), see Phobius details amino acids 490 to 509 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 59 to 519 (461 residues), 388.6 bits, see alignment E=2.1e-120 PF00083: Sugar_tr" amino acids 66 to 524 (459 residues), 380.2 bits, see alignment E=1.5e-117 PF07690: MFS_1" amino acids 93 to 263 (171 residues), 46.1 bits, see alignment E=3.4e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (578 amino acids)

>mRNA_2707 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MNPENESVPASKATTLAGSAAPSRAASVKKEAHSAPSSRPGSTFHPQDELDGVPSKDRAP
PFVVALCLFQSLAGLLFGWEQGVIAGLTTNPVYQRRFGEPDPTSASGYSLPSTRLSLITG
FMSLGALFGALLIGQLLRRTGIKIAIIFSLVIYAAGIAIETSGQSQYGQEIAGRFVTGFG
VGSLSLLAPLYQAECSPKHLRGLITSTYQLMATIGIFLSNAVNYAQHDKGTDFSWRFPIA
IQFIWAAVVFVGTVLAPESPRYYVQRDNVDRARVNLAKLRGLDEQDPELLAELDVIIKGV
EDEKLAADATYLDCFRMKDRMLLRTMNGVMVQWGQQWSGVNFFFSYGNKFFATSGIKDPY
QTQLILSGINVVATFPGILAVDRLGRRTLLFIGSAMMFSGQIIAGSVSTAKPNDPAAGKA
LIFASCWFIAGFACSWGPLGWVVAAEQFPLKIAPLCVSLATASNWLNNFIIAIIVPYITD
PGYGNIGTKITFMWAGTEFLAFLYTFFFIPETKGLSLVQVDELYLTGVPAWRSASWTPYG
GATARNQKDRDEAKRLKLGTEASHHENVPTKRNLAEDV