Protein Info for mRNA_2723 in Rhodosporidium toruloides IFO0880

Name: 11091
Annotation: K03258 EIF4B translation initiation factor 4B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 501 PF00076: RRM_1" amino acids 97 to 163 (67 residues), 46.7 bits, see alignment E=1.1e-16

Best Hits

Predicted SEED Role

"Eukaryotic translation initiation factor 4B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (501 amino acids)

>mRNA_2723 K03258 EIF4B translation initiation factor 4B (Rhodosporidium toruloides IFO0880)
MAPKKKGQKMDLNSFLADSTTGGSWADEMDELPTGPSAGPTFGEGPGLGGSHLTRGMGQG
DRYGPRSGGPGGFGDRDDGRPPRAEVPFPTAPPYTAFVGNLSFETTEADLEDFFTDLSVK
SVRLVTGMDGKPRGFGYVEFETADNLSQALGASGHDLGGRVVRISVAEAQTSRMGRADEA
STWERTGPLPGLPGRSGGFGGMSRDRGPPRDGPGGFEEIERDAPIRGGKFTPSAPSEPRR
GFSGYGAPAGGPGGEGGRPPRSFEPAPEIERDAPIRGGKFIPSAPPAERGERRQMFADRE
RTGPGADEAQTWERRGPLPGQERKGFGGGFGSRTPSDPPMTRRPLQLSARSATGTPGASP
PSSTSSTPAGSSSRASPFGAAKPIDTASKEREVEEKLAARPAPTLPEKKERKEGFAGAGE
KSEGAWVRKGPLAPAAAKPKDVAPPLPPVEKDTPPHAAAPAQQAAKIEKPAMRKEGFSYS
NVAGKSEGGEVEEVTKGVEAL