Protein Info for mRNA_2736 in Rhodosporidium toruloides IFO0880
Name: 11104
Annotation: K11093 SNRP70 U1 small nuclear ribonucleoprotein 70kDa
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (475 amino acids)
>mRNA_2736 K11093 SNRP70 U1 small nuclear ribonucleoprotein 70kDa (Rhodosporidium toruloides IFO0880) MVGTHLLPPNLLKLFAPRPPLPYLKPTGRDPDLPLKSLSTRRAPKPIVVSETLRQIREER DEKELEAVEKGERPDRGEAEDEGVGAEMKQKAEEAEVKVEEATGGEVPAKTDGDAGVKGE ESSAMAEDKEEGEEPERAAAEAIAASAKDGMKVVKASQPTDAVTVDLCEEEKFQLRKRER QRKREEAMAKPFAPQDDEEICGDPYKTLFVGRLPLEVTEKDLQREFEIYGPIERLRLVTD VHTGKSKGYAFIVYERERDMKAAYKDADGLKMKGKRVLIDVERGRTVKGWKPRRLGGGLG GRIKKLKGGIPAPEPVAFAPSGFAPRGGFMGGRGGGFRGGRGGFGGRGGFGGRGGFGGPG GNFGGPPPGGPNFGPPGQGYGNRGGFGGGGVGYGGMSGGRGGYGGGPPPSGPGGHGGGPG MFAQGEKRSFGEGPGMYGGGPGGPGMGGPGMGGPGMGMGPPRGGGGYPDEKRLRY