Protein Info for mRNA_2738 in Rhodosporidium toruloides IFO0880

Name: 11106
Annotation: K20121 FNBP1 formin-binding protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 PF00130: C1_1" amino acids 191 to 238 (48 residues), 38.2 bits, see alignment 2.1e-13 PF00018: SH3_1" amino acids 317 to 363 (47 residues), 40.9 bits, see alignment 2.6e-14 PF14604: SH3_9" amino acids 317 to 367 (51 residues), 45.7 bits, see alignment 9.3e-16 PF07653: SH3_2" amino acids 320 to 367 (48 residues), 22.6 bits, see alignment 1.4e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>mRNA_2738 K20121 FNBP1 formin-binding protein 1 (Rhodosporidium toruloides IFO0880)
MLHDEFQSLEASGIRQLEDLLGRLLAIQQESGEKFLQAVGKAKEVLSVVDVEADQQKFVD
QHSATLTAAYEHPIDLVFEECPVWHDTDEFATTPAAITYLQNVKVKALTRVGEISPAIET
KRRDISGLRNLRETYEQAKGLGGDTVAVIENLYNVTHETTLLELQQSELQASVELIDATL
GDDASSDLRPHEFKSSSFVTPSTCAVCESSVWGKGMSCKKCNMAVHVKCELKVPPGCAAR
PGAGVVRHKSKKSAPPPAGTGASSSTSSLTRTSSRLSNSSVASSAAPPRRAVPPLTTSSP
AILPQPSSASTEKATLLYPYEAQSSFELSVEAGAVVEVVEPEDEDGWVKVRVPTDGRVGL
VPASYIQFGGAIGNGSAGGAATAGGTGQRGFVRSTITLLKRPTNLRSSKAKSSS