Protein Info for mRNA_2745 in Rhodosporidium toruloides IFO0880

Name: 11113
Annotation: HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1064 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF02585: PIG-L" amino acids 33 to 213 (181 residues), 43.9 bits, see alignment E=1.9e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1064 amino acids)

>mRNA_2745 HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785 (Rhodosporidium toruloides IFO0880)
MLRSFLLPLLCACLLAVSTANAAIFNCVGGSVYITAHADDDLLFQSPTVLQDVQAKNCVT
NIILTAGDNGGGLAYAQSREQGNQAAYAYMASANNTYTEFKAVFGGQSVLVRTLKAKPNV
QKVFFRLPDGNLAGQGYSVTGYQSLRSLYFGTIPTISSISGDATYTLATLKQAIGQILTA
RKPAYIRTQDYLSAYDGGDHADHLTTARLVKEIAATYASSASLSGFMGYPIQNLAPTLSM
NSTLFNQKSTAFFTYTPYDPEECQSLSACSNRGEYSWLQRSYVVTSALATTSSDGAALAP
ATLPNGTDIALQAVATASSVAPGSSVGAVNDGVFGGYPGNETAEWSSNGEKAGAWVRLTW
KTPVVVNAVVLYDRPNTDDWLTAGTLTFDDGSVVSFSNPINDGTASKIALPKTNYTTSSL
LLTVTATSASTVNIGLSELQVFGTACPTCVVASPSSTGSSASSTASSPSATVSTSSAAPT
SSAAPVISADLALNATASASSWNDQTTQTPDKAIDGVVGGYTDTGGDYTKEWATLGEGVG
AYLALTWNAPIVANRIVLNDRPNLNDQILGAKLNFSDGSTLVTGALNNDGSGTTFDFPTK
TFNSLWFTVTSVSNTTLNVGLSEFQVYYVSSATSSSASASSTPALTSSAVVTTSASSSAS
SPTSTIASSATTPASSTPAATSSTPAATSLDLALNATAGASSWNDATTQTPAKAIDGVIG
GYTAAGGDYTKEWATNGQGAGAYFTLSWPTTITANRIVLYDRPNPDDQILAGSIAFSDGS
TLAIGTLNNDGSATTFDFGDKSFNSLNFSITSVVSTTVNIGLSEFQVYYVSGSSAASTTV
ASTLPATTAAPSTTSAPATTSASPTSSPATSAAASSTSTRTTIVFSSTLSASSSAASSTS
ASASPTSSSAPAPSSTLSISGSPDLALNAIANASSWSAANSQTPDKAIDGVISGYKEDGT
GDYRKEWATNGEAVGAWWSLTWSSPVTINRLVLNDRPNLNDQILGGVVSFSDGSNVTVSA
LNNDGSDTTFSIAQRTISSLKLTVTNASSTTLNIGLSEFRAYLI