Protein Info for mRNA_2803 in Rhodosporidium toruloides IFO0880

Name: 11171
Annotation: K01301 NAALAD N-acetylated-alpha-linked acidic dipeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 882 transmembrane" amino acids 35 to 53 (19 residues), see Phobius details PF02225: PA" amino acids 292 to 367 (76 residues), 42.5 bits, see alignment E=8.2e-15 PF04389: Peptidase_M28" amino acids 494 to 694 (201 residues), 58.7 bits, see alignment E=1e-19 PF04253: TFR_dimer" amino acids 757 to 870 (114 residues), 66 bits, see alignment E=5.1e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (882 amino acids)

>mRNA_2803 K01301 NAALAD N-acetylated-alpha-linked acidic dipeptidase (Rhodosporidium toruloides IFO0880)
MTEKKSLADLAASKEPLLPLQTPSSSSPPRQTRTSLLKVIVALCALGSLWYQFGIATSTD
GLARGGDWRSLARFGRHGCSHGGKGRLAWKATRLSEKDTQDTLLTVPSAESAKNASRAYT
AHTHVAGTPEDRNVALLIKSQWEEILGADADPENKRVFDAGTDASREALLGRSKHGRHDD
KKHKKHKKGLVLKIRRWMEKIARRARYGHHHGKKGHDHKGRHEPRLERPRVWTDTYYSLL
NYPVSASLSITPPGASEPSWRAKLKEEVFKEDPTSGEGPGIWHGFSKNGTAKGQLVYASR
GTKEDFELLKSKGVNVEGKIVAVQYGGSFRGLKVKAAAEAGAVGVVIFTDPIEDGEVTAS
AGHAAYPAGPARAPSSVQRGSVQYLSLYPGDPLTPGQPSYNPDLPNAPDRLDRDDPSVNV
PTIPSLPLSYEDAIPLLKSLNGKGFKLEDGREGKPEGWREGALREYGVEYFTGPGEDEIE
LVNNVDDKITPIWNTYALIPGHIKDEVVVIGNHHDAWTFGAGDPNSGTSSMHETVRAFGS
LLEKGWKPLRTILVAAWDAEEYGLIGSTEFGEDFAPWLKKNVVAYLNVDVSVSGPIFELN
ASPSFADLLRNVSAQVSDPSREGKTLADVWEGGDDEEEVTDEDSEKKLLPIAALGSGSDF
TVFLQRLGIASANFAMRRSKKSPVYHYHSNYDSFHWQSTFGDPTYQRHIAVSKVLGLAAV
RLVDDLVLPINVTAYAVELGRYVDKVASLPLASSLDFTRLRSLTSAILLTSQRIEQKGTK
VAHAVEEKGDKRAIRQLRAVNKAIKAFETGFLGDEQGLKGREWYRHLGVAPGRWLGYGAT
TLPGLAEALTLDQDVEQAKVEIKRLEKAFATILKGLVKGVKA