Protein Info for mRNA_2805 in Rhodosporidium toruloides IFO0880

Name: 11173
Annotation: KOG0128 RNA-binding protein SART3 (RRM superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1049 PF05843: Suf" amino acids 293 to 377 (85 residues), 26.3 bits, see alignment E=1.4e-09 PF00076: RRM_1" amino acids 698 to 760 (63 residues), 50.1 bits, see alignment 4e-17 amino acids 789 to 856 (68 residues), 63.3 bits, see alignment 3.1e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1049 amino acids)

>mRNA_2805 KOG0128 RNA-binding protein SART3 (RRM superfamily) (Rhodosporidium toruloides IFO0880)
MANEPDEAAVQEYSALLEQVSAAPYQRDLHLQRIQLAKSLGLGDEVEQARQALAGYFPLS
EGEWLEWIEDRKQQLPQVPVDDVTPHLEVMELYRRASRDYLSIPLLASWSEWVVGQYYAS
KGLSPPPAAVEEDDEDAAMQAADRKVGEPDQLLEVVFSLEEVRGVCGEVMAVAGAHLAES
SRVWKIWQDFEMDLLKMDPSPDQLVQVEQLYLERLKVPHLDIAETFSAYSSFVTTFDNDN
YDKSLPAANKIYSATVKKADERYPEEEKLKAAGYSAQAYLDYVAWEREVKRPDTPLVKGI
FERAVKDHPNDIEVWEAYLEFLHKIPEKESNLREVAEKAVRNLPSSVSLWTAYFRVAEKL
QLGADEVETLFQRATATRFFDKDMDATVSLYHARASFYRREMDSKPMEDGPDADLVGFAL
GVLQEGIEATKKVHKKGDPQNRLEKYLIRLYERFHMVDEARQLWEELTKSRAHDYALWYA
RADFETRMGDYQRAHEVYTKGCSERSLNYPEYLLEAWLTFETEYGNLADLEFALAKSKRQ
KKGLERKRAREAAQATKAAAAASTSAVTQDAELFIAGAVQSQDAGESSKKRERADEAEQG
TKKVRIQSPAQEAKEPTRDREHSTVFAIGPTAMGEEDVRKLFRDCGEIRELHVKTLGDRS
YAQIEFMDKESVLPAQTKDKKRINDEEVEVYIAWQSCLYVTNFPESFDKAAVEQLFSKYG
TIFDTRWPSKRFKTSRRFCYVQFANPAHAQAALELHGTELEPGHPLSVFVSDPSRKKNRT
DANANSRELYIANLAKSVKDVDVRKLFEPYGAIKDVRVPTDDKGLAKGFAFVEFEEEVSA
RAALALNNHELRKRHISVTIAEQRAAGTKVGPPEKGVEKENRGVRVRGLDPSTQEAIIQQ
EFEKLAPVRRVNYIAGSSEAVVLLENPADVGKVLMQHNSMTVDGKKVDLAAERPRQNRSG
GGRPPQGPSDAPLVPRVTSRGRGRVALGGGRGGRGGRGGRLGLGAGRPAAAATSSSAASG
DAPMADASATGSSKGQDAFRAMLSKKKAE