Protein Info for mRNA_2833 in Rhodosporidium toruloides IFO0880

Name: 11201
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 566 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 56 to 74 (19 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 110 to 131 (22 residues), see Phobius details amino acids 146 to 169 (24 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 263 to 285 (23 residues), see Phobius details amino acids 299 to 321 (23 residues), see Phobius details amino acids 328 to 350 (23 residues), see Phobius details amino acids 356 to 381 (26 residues), see Phobius details amino acids 424 to 443 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 7 to 454 (448 residues), 351.1 bits, see alignment E=4.9e-109 PF00083: Sugar_tr" amino acids 20 to 458 (439 residues), 371.4 bits, see alignment E=7e-115 PF07690: MFS_1" amino acids 22 to 396 (375 residues), 105.1 bits, see alignment E=3.9e-34

Best Hits

KEGG orthology group: None (inferred from 66% identity to scm:SCHCODRAFT_64323)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (566 amino acids)

>mRNA_2833 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MEPTIKEGSSRRLVLAISCFASLGVFLFGYDQGVMSGLITNPFFRSYFHQPSRVELATMV
AILEIGALITSLLAGRVGDIFGRRATIFAGACIFSLGGLFQAFTTGFRMMVFGRILSGFG
VGFLSMCVPVYQSEISPAENRGRLGCIEFTGNIFGYASSVWIDYFASYITSDLSWRFPLL
MQSVIGIILAIGTLFLPESPRWLIDTEQDEEGMGVLADLHGDGDPEDERAKEEFREIKEG
VLAEREFGDRTYKAMWRRYKYRVLIAMSAQFCAQLNGINVISYYAPLVFEQAGWIGRDAI
LMTGINSIVYIASTVPTWYLVDTLGRRPILLSGAATMAVALTLVGFFLYLDAPYTPNAVV
GCVIIYNAAFGFSWGPIPWLYPAEILPNAFRVKGVSLSTAANWLSNYVVGEATPILQETI
EWRLYPMHAGFCVFSFILVYFAYPETMGVPLEEMDELFGDQPRRPLLPTSDEEGEHAPLR
RSHSIPTFRHGRPHSHADDVEPPYPRNHKRTLSGASLPGRGSDGVEAVRGWWSGSQGGSS
RGGSRPTTPRIRDYQAVRQETDDERP