Protein Info for mRNA_2840 in Rhodosporidium toruloides IFO0880

Name: 11208
Annotation: KOG4178 Soluble epoxide hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 PF12146: Hydrolase_4" amino acids 64 to 314 (251 residues), 54.2 bits, see alignment E=1.9e-18 PF00561: Abhydrolase_1" amino acids 66 to 172 (107 residues), 65.3 bits, see alignment E=1.1e-21 PF12697: Abhydrolase_6" amino acids 70 to 314 (245 residues), 65.8 bits, see alignment E=1.3e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (336 amino acids)

>mRNA_2840 KOG4178 Soluble epoxide hydrolase (Rhodosporidium toruloides IFO0880)
MPAAIAASDPLADSPAQDLPETIFPGDNLVRRGWCTVAKDKARAAAPHKLYYELHGQDEP
TSHRMVFTMGLNNSSFAWHNQVSHFARLSGYSCLVFDNRGVGWSDTPPGAYSTSEMARDV
EDLLDFIGWKEERSINLVGVSMGGMIAQELALLIPTRIRTLLLTSTRSGSRFDPPSLKAI
NMFGRLTTGLAKTPEEQVRLVADTLFPEEWLSGSVEEEGEWKGKTRREMVEADFLYRYHI
GRRQTLGGRLGQLAAVFKHRVSPERLALIAEQIPRVAIIHGTEDNLIRVQRAHELHKDLP
GSHLKIVEGGGHALPSQIKQEYNAWLSEHAEREEAK