Protein Info for mRNA_2845 in Rhodosporidium toruloides IFO0880

Name: 11213
Annotation: K14767 UTP3, SAS10 U3 small nucleolar RNA-associated protein 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 803 PF09368: Sas10" amino acids 728 to 802 (75 residues), 87 bits, see alignment E=4.9e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (803 amino acids)

>mRNA_2845 K14767 UTP3, SAS10 U3 small nucleolar RNA-associated protein 3 (Rhodosporidium toruloides IFO0880)
MARPKQSGTRKATQYRAKPIEREREFDRAQSRMDRRIETYDDAMMGGDEDEFHLNRDKML
LEDDGGGNGYDDDGVDAPDTIYDLGLPSSASGSPSPSEDEDEEEDDTPRQPRQFKRGRDE
DLTKKGRFGHEYDPKQDVVFPSSDEDESDEDDEAGQVDERQLAGADDEDEEEGSKRRKGA
AEEDDEDEDPHWRADQYHVTRRDPGEADSEDEEALALEEEEVRRLQKKMREKMEGNDFGL
DLGVDGVDDVAEGEKEGKRRRIEEEDEAVMTAGADKLAKDAPSTADMSEPEAIAHLLKTS
PETLALVDDFVLTASKIKQVEADLAEVRKGDGQGGEHPALAIMELEHQALTTYLPTLAFY
FSLLLSPTPAPQTLIEKVIARLSSLRGSLATMEELDLTSATYGAGDDEGDDEEELEDDEE
EEDVPLGRRNARSRSMLASEGLDFADALAADEEEEDEDSEEEVTDSMLAGLTDAELEELM
GQMEPGQGAEELMERVRAKQREKFGDGFGEEDGMDVDEDDEEQELERERAQKAKKAKGKG
ASKKAVPAIPELAPLSASSASSSSLSRPTVRATADSDFLDPLSLSHADRADKASKRHTLR
FHASQVEQKAQRREARRRGLEGDDDVPRRSKEQARREVLKKQQHGAAKDAEKGVGLDEGD
FDEDDRRAAKAVREDRDDDGGDDGGDDDYYDLVAAEKAEGRKAKKARYDDARAAEKEELQ
ALADASVDGPRAASRKILSNRGLTPKRNKLNRNARVKKRHQYDQKQKKLRSMQATYKGGE
ARTGYEGERTGISRTNVRSRKLG