Protein Info for mRNA_2852 in Rhodosporidium toruloides IFO0880

Name: 11220
Annotation: K01164 POP1 ribonuclease P/MRP protein subunit POP1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 789 PF06978: POP1" amino acids 56 to 129 (74 residues), 78.9 bits, see alignment E=5.6e-26 amino acids 139 to 208 (70 residues), 84.2 bits, see alignment E=1.4e-27 PF08170: POPLD" amino acids 479 to 568 (90 residues), 95.3 bits, see alignment E=2.4e-31

Best Hits

Predicted SEED Role

"Ribonucleases P/MRP protein subunit POP1 (EC 3.1.26.5)" (EC 3.1.26.5)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.26.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (789 amino acids)

>mRNA_2852 K01164 POP1 ribonuclease P/MRP protein subunit POP1 (Rhodosporidium toruloides IFO0880)
MPPKRPTDGVSSGADLKRQRMRAQRTIAVEGQKGRAGGSAGSGNDGLPAVLEVEKFAQAR
VFEITAMQRAMKSAKEAGTQRAFQSLPRHLRRRAASHNIRRLPSRLRERAKAEVPKDAAK
PKRVSRSMLGRHRQKPGIKAELFRQRQQNKLWLETHVWHAKRMHMTEIWGHRLAATPTAK
AFRSSYRASHHGALVHDASYYQYFQLEGPFADLAQILQAVCDPASVSPASKRFSSGSREC
TVDVYDSTQAYPNGLLGPVTFIWQPVSADSTPSTSTASPSRTLLVRVHPAVARHAASSVQ
HAIEHLKLGLSVGLRRYTKEFLTFEMTGRRATEVIKAVLKPVKGTDGATKAAWRKLDPAA
GPGAVPEGMVFGFEVYDPRLSFPPQLEKASSDTGDLEPLIPSPQIASTPTFWDIKHRACI
HTPRFKKRDLDARRAEELIPGIRLAPLEQDDRIPVLLSQHIIGSQTTFPSGSRPPPIYGW
TLTVPAGWGMPFWSSLVHSTPRVAGLRERSHQFYEAGAPRFPEDYVGSPGFDEHEIRREA
DERGYWERRPPAKRPNYDKFGTRSPWKVAMGEVLKTAWSRNGSSGEQEEGKSADGRPFIV
PASMARSVLRQVDGSNSCSGNMQQDPPTSQPTPRQRLQQLEVDLLSEWAAASTSADPSCS
YLLRAMVRVRLTPCTRGVPEDLGLVYELVEEQASVVREKVDKARKGKKVLATGEGEGAED
LCDPPSPDQVIGRITTGHFSLSQGHGDGIAVISLYRLLAMWKRSPALQRLVLFRNRDGET
FRAATVELL