Protein Info for mRNA_2873 in Rhodosporidium toruloides IFO0880

Name: 11241
Annotation: HMMPfam-Yeast cortical protein KAR9-PF08580,ProSiteProfiles-GAR domain profile.-PS51460,SUPERFAMILY--SSF143575

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 863 PF08580: KAR9" amino acids 242 to 303 (62 residues), 25.5 bits, see alignment 2.5e-10 amino acids 354 to 410 (57 residues), 34.5 bits, see alignment 4.8e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (863 amino acids)

>mRNA_2873 HMMPfam-Yeast cortical protein KAR9-PF08580,ProSiteProfiles-GAR domain profile.-PS51460,SUPERFAMILY--SSF143575 (Rhodosporidium toruloides IFO0880)
MDSAHTLKPRTSTASLSRLTDSTNTHHAPSTSLYTSSSPLKPSLAPHTPTGSRALPQSTS
TASDLAGQLADLSLDEGSTSAIGGEEGEQRREQADRADGGVADKGSSGGEGAVHDGTTMN
GTNGSSARNASSTRPSNLPSLLSVSSSITELLMEIQEVNTLIFEIQELRHATSMSASTSK
NGASGAGGTESVSEVDAALMRLEAKLEAVRGQYTTLASQVEPLLNPGHSAPTDERGELDL
LRHKWVDTVGDWEAAQKDADVLGEELKEDKWLVVFRTVSAQAEDMMRSLEKVVAQGRSFL
DSIPSPPSSSSYSARRGLSRSPSEPVFPSPSLGTPSSFAHLSPSLASSLLSTLTPLLSTL
HTKSSYYAPATDRVLRILEKGVKERRTTNGEVVRRLSGMEGRWKGLKGDVERVREELERA
KEGLSGVVERAKGGRGEEHTPTRRPANGLASSASSPSIATLGTVTSPDHYPDSLSLSRST
TRPIPPRPSKSLKRLVSDSSSTPPRTPSASFSLSHRRSMSTMSASLAPYTADARRQSLRP
VSPSPFDSRPRWNVATRSRDSAAMETLASPAPTPQRPAPRSGRVSAAGLVRPASRASMSA
RAPSPAFSDASVSARPETPSRIPRPRSSIAGAMSPGSRRQSGAFGFGGGGSEAGDAGLRR
ALSPTPGSASRPPLSSKRYSLSRSVGMPSRISRPTSPALSTTSSSFSFGRSQTPEPSLMA
QAQRIASIRAPPPVPKLPASYRPRSSLAPSRSTTPAPSDDSYVPNPLDPLDLLIAQTISS
LPLALSITRIDPPLSRTQAATVELFQSRYSFALPGGRGSGAVMLKLVDRVGPRAKKGEKK
VLVRVGGGWQDLEAFALALLAGV