Protein Info for mRNA_2876 in Rhodosporidium toruloides IFO0880
Name: 11244
Annotation: K18715 NUP159 nucleoporin NUP159
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2160 amino acids)
>mRNA_2876 K18715 NUP159 nucleoporin NUP159 (Rhodosporidium toruloides IFO0880) MEAPEEDAEFLSLSAPVQGVTLRLSQPFDLDNAAGGKAEPGNLLAVSNEFGWVVAARSEG GFALFSLSTLRSTLASASPHSTPDVPPTLSVTTSAPVDFLRFAMGEKIVVAGLRDGSVAI WRLKSLVEGDTAPLRTIPAVAPSPLLDVCPNPGPESPLLAIISPAASMTVFNIESSSIHA TISSSFAATAGCWSVKGKQIAVGIRGGTVLQLTPEGEQKASLALPSDLATQGGEWEVRSV EWLENNVFLVTYGRPRTAGGEEPQHEDEVFVLTKGTGGAVEYARFADPAPPFGMMGRQGR RWVGRFKNWEPFKHLLFMANAPSGDIGVIGQSAIASYPPGSSSGWATLALPESSRPTLPL GEAGEDACPLSLDLDLSTPDEGGQRKPAVLVYTSQGIVAYWRIANEKCERYDGMVTSRDV VTREGDAPSTAAPAATPAPAAPSGFAGFGTSSAATSTAPAAPSAFSAFSSPSSTPAFGAS AFGSSPASTAPAFGTTATPAFGSTSGFGSFSKPAVSTPTASSFATATSTGGGFASVPSSG GFASFGSSGSAFGSAASTTKTASPFGSGSAFGSGGSASTPVFGSSSTPTSMGGASSGFAA FGAAAGTGAAASGFGAFGGKPSVFGGAAATPSTSSTSAFGSGGTAPKFSFGATPSAAAKA PFAARQSADSDNEDEMADEEGVAAESRVDEPPDLEPTRTGLDFAQSVREAEMKPSTPAAR EESKGPEGLSFGGFGLGGPTATTAADKPATSIFGSTAATATPPAATAPKTPVFGGFGSSS TTAPIFGGGGFALGQKPAAPAEAKKDEAPAEAKVDDQPPSGFGAFSAPSGGFGAFAPKKE GDAEAPKSAFGFGGSASTVGGFGAFAAKKDAPETKQEPLVLPTPTPPADKPATSSSTIST NGFSFAPATTSIAPATGFSAFASPKPSQSTENAAKDEMPKAAEEEQADVQKEEKEEIGMK PTPAKPASAFGAGGIASPAPSTPVTERPAPPAQEEDDKEEKQDEAEQEEEEEDDDEDEGE EEEEVADENAPEVKSEEKPKPAFSFAAPAANNAGAGGFPKPASPGGFGSFATSSSTTGLG FGSAASTPKTPTTGFSFGGTPAAAPTSAATGFSFAPTASSASSAPTFSFAPAATAKPSEP IAVPSPKEEKSTTKSLFGFASSPPDEKKRGDSAGSLLGRLGAKDDEPEKAEEEPEEEGGS EEGSDEGVSEFEEEPSEEEEEEPVASTPAAPSSLLSRLSPAPPSPAAEPSTSASAPAAKA PAFSFASPATAASPSPAGPAAKSPFSFATPPSASSPASSAPPAKPPSFLNFASSTPKTSS PLAARPLGVPAFSSSAPRVPSPLSLAPSALKIDGKSSTPVAQPPAPAPTAASSFSFGSAP TLPVPTTATAAEATATPASDAAGSRPSLDAQSAPPVSTAAPAPAVDAPGPRQRTPLASTT APKLGTQLLAAEGAAAPPVEEKGMAGEFLKAYLSVQKDFEILRKNAAIIKDFVADLAKPC QPSILSKDDRAQYDDKFWSFGDLEKLKRLTKDAKPGVESLHAAAISQKRRVAELESQLLK AETKREEAGRFIRARADPAFAKMVRVRQLGPEQSENQRTIRLQMQAAIASAEQLEEHMLN LKKRLTDEKLGRQSFKAPSLDSVSRALRNISLAVSEKTLELDDLTLRLDSVRLQPASNAT PRRKLLQRSSSLALDEPLQRSPALRKSATTESSSNAAATAEAALQAERSGAILKQALLAA RRDQPLLNRSACGSKTSRLAKPAADIQLAFSQGPITGERLPRPRRFVPPPPSTPSIPSTP TTLSEFANSFEPIIATPTPLLATPSVPAASSHSPLSPFTTSTPISFGAPAATPTSFQSFT PSTAPVASKPAFGFASPTSAVVPPPAFTPVSFPPATPTVASPAESPAFASSTGASAAPPP VFPSLTLKAAPQISFATPISAPSPSSASDTSPAASSRGSASRQTSSRHHPGAVQLKPATG QSTPAASTFDWGPLPSSLTNGSPSSSSTSTAPGKPAAPSAFSFATTTPAATASKPAAPTF SFATAASTSTPTKPAAPSFSFASTTPATTPATKPAFAFATTTPAGTPTSKAPLSFAGYGS TKPAPAPDVAAPDAEEEEGSGDEEDEEDWEGEDGEFGDEDYDEDEEGLDTISEANEEEDE