Protein Info for mRNA_2884 in Rhodosporidium toruloides IFO0880

Name: 11252
Annotation: K10838 XPC xeroderma pigmentosum group C-complementing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1124 transmembrane" amino acids 146 to 162 (17 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details PF03835: Rad4" amino acids 572 to 691 (120 residues), 78.5 bits, see alignment E=1.1e-25 PF10403: BHD_1" amino acids 697 to 747 (51 residues), 61.7 bits, see alignment 1.2e-20 PF10404: BHD_2" amino acids 751 to 813 (63 residues), 67.8 bits, see alignment 3.2e-22 PF10405: BHD_3" amino acids 820 to 892 (73 residues), 97.5 bits, see alignment 1.2e-31

Best Hits

Predicted SEED Role

"Translation initiation factor 2" in subsystem NusA-TFII Cluster or Translation initiation factors eukaryotic and archaeal or Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1124 amino acids)

>mRNA_2884 K10838 XPC xeroderma pigmentosum group C-complementing protein (Rhodosporidium toruloides IFO0880)
MLQAHTMSAHSTPPLASTSRFFSHDPSHSGQSTPLSLSASADESDAAAGTGTGDGGAEDD
DLDEDEEAWDEVDIPQAGAETGQSGGAGEDQGAAEGADAATAAERAAKGIEIVISRGGQA
GAKGKGKGKAKGETARERMIRQERHKAHVLSLLAMAMIRNRWLNDKELQARILSVVPLPL
LNAFSLITPSRYPNPRDRSRLFDRALADLTAWWYASWTIDDDHELRRRDVEEVEEQLAGW
KEEGERLRAVAKRKRDKWEQQQAGDSKGKGKARDPPLDPSQIPPFPWAEQPLLTAPQRKR
ALDLSASTSKLPLHPSPAPGTGPPVLIRPYTPASSTWEVLRPPVPSSSSPSKGPLASLYT
AAHNMRGSRDLSSHLFVALLRAIDVPARLVVSLQAVEWRSKAQSGGGSKGKGKGKKGAAA
TAKWKAKGLKGKVMGKGKKKAEDDEFDFEDDSESEDLAPARPRPQPTKPKAKASTSTTRK
KPPGSVSASASASASSSRAASAEILVLSSTASSASDSDGFVDGHGKLNYKVPKIKLRGSG
GAKGKNGQRVAGWKKEAELTRAPSPDAAELNNPPTQWAEAYTRYNKEWITVDPVRKRVRC
KQIMEPVQKGAKGGGEGNVLAYVIALEEDGSVRDVTPRYARAFTNVTLKLRVPTSSKARK
ENDGEDWFAGIIKPFKRGFELNRDREEEEELWHRQTNAPFPTSLGGFKNHPNYVLEQHLH
RDEALLPSARSVGLFKGDTPVFRRSDVVTVKSQENWYRVGRVIKSAEIPMKFVKQRAVTI
NRRREEELAKMDGGTVDEQPLYAESQTEVYAPPPVNDGKVPKNNFGNIDLFTPSMLPEGA
VHLPSKVAAKCAKELGIDFAEAITGFEFRQRRAIPVMAGIVVAAENAETLQEAILTLEQS
TLERELAKQQDRVLKRWKKLIQGLRIRQRLLDQFKDPEEVTDEVLARELSGKKDKKGKGK
AKAEPASPAPEAVNVAATSAPSLKIRLNGSSASSAGTANGSHKRHSRSSPSPTSLSPSDV
SAPPPRKRLASSTNTCVDAGALSGTSTSGRTLRVRLPKKEEIKEEPSDEGGRRRSTRASA
QKAKGKLALKDDEDEDEEAAGEGGGADEPAEEASDEGFEFDEDF