Protein Info for mRNA_2888 in Rhodosporidium toruloides IFO0880

Name: 11256
Annotation: KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1141 transmembrane" amino acids 58 to 77 (20 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details PF00168: C2" amino acids 459 to 567 (109 residues), 38.3 bits, see alignment E=7.2e-14 amino acids 684 to 806 (123 residues), 30.7 bits, see alignment E=1.6e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1141 amino acids)

>mRNA_2888 KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain (Rhodosporidium toruloides IFO0880)
MGLFKRRNKRSSGSSTGGTEERGKDGRGEEVLRVVNCTWGEDEQRIWKAFVRDVEGKAYV
LIVGLVGVLVAVNVLLLSWEVRVALSLLVAVAVTYTLTTRLHSASLDYPSYLSSLSSSRF
AHPAEASSAANKKEYESAEWINAVLDKLWPIVDRGLFVAGIDLMEDAMKALTPPVVRSVR
VTSFEQGTHPVRVLGFRILPSSPTFSSFASSSSASPISSSKPPSSSPPSPPSTKPPLGTS
ARLSGQGQAESEFGESTHSAWSDPSDPQPAPWAADAEEQGEGKEAESVEMEVEVAYRRKV
GVVRKGKGEADEEGVKMGRETADEELGEGKIEPDDPSENMHFVAYVGIGAHKITTLPVPV
LIAVTSLRGTMRLRLQFTPEPPFIKTITFGFEGMPQVEMSAHPLRGSLDVLSLPLLDTYV
YKAVESVIANFVLPRNYGLDIRKVLLGGDVAIKTRTIGIVVLVVHSASHLPAPTKTAALL
PTRRPGIDPYVRVSWAGMGKSLYRAKVVRAVKEGGEARWEEMCFVRVPSEPVQDGAKIRL
KLIDHDRFREDDTLGYVDMPIRSLHSNPGEWIKHRDKLVTIEKDEKGKVNPKVAAAGEEG
EEEATVVEYSAAFFPLVEKLPKKNGEKAEDKDDKHDPLASTDFGARKFEEEEEHEKKKRG
RLEALQELLAGRQPAHRSHPSGILSFQVHSIADLQLEKHSGPIRAGMQNLKMGPTKAVRK
AELPSSYVQAFVNDEMIFRTRLKPFSSAPYFNGGSEAFLRDWTNANMSFAVMDYRNRDHD
VLAGYVSINLGEVLSETSQLSKWYPLLGGSGSGRIRISLLFKPLAIDIHPSLREWSVGTV
QVASASLSGLHERNFAGGLRFETEEGTSAIVPAVDRQDASKTDALTFDFSSGLVVLPVLS
RIAPVRISLYGAAMTGAKSSKKAFAKGVLFVNQVTRGDPHAVHITLSRAKEPVLPCPHPL
PQLLDTPVAESPAETNANETTSSPRPSSASAAAHPGQPTSQDDLVLTLTLRWRPGMSNTH
STVVLSASSAARSAYQLYLYKRDTEAQSRREKRGEQERAEGEVMDDDDARSTDTSAGWSS
ESDDDFGAQAIEEKKDGTRTRKGGTLRWLKHGAKVAQKKFKKTKDHGLTDPAPDTELQAA
L