Protein Info for mRNA_2901 in Rhodosporidium toruloides IFO0880

Name: 11269
Annotation: KOG1289 Amino acid transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 62 to 83 (22 residues), see Phobius details amino acids 94 to 119 (26 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details amino acids 217 to 235 (19 residues), see Phobius details amino acids 256 to 270 (15 residues), see Phobius details amino acids 294 to 316 (23 residues), see Phobius details amino acids 348 to 371 (24 residues), see Phobius details amino acids 399 to 420 (22 residues), see Phobius details amino acids 426 to 448 (23 residues), see Phobius details amino acids 468 to 490 (23 residues), see Phobius details amino acids 501 to 521 (21 residues), see Phobius details PF13520: AA_permease_2" amino acids 64 to 509 (446 residues), 207.4 bits, see alignment E=1.8e-65

Best Hits

KEGG orthology group: None (inferred from 54% identity to cci:CC1G_09113)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (553 amino acids)

>mRNA_2901 KOG1289 Amino acid transporters (Rhodosporidium toruloides IFO0880)
MPSSISDSELKDSPHPTFTTSSPPATNGVLARDGDSSSTAGSDEAILAQLGYKQEFRREF
TNLSTISFAMSIMGVASSVVTTFNTPFTLGGPASVVWCWFIGACFNFCLGTSIAELVSAY
PTNGGLYSASVYLVPKRQRAFMGWSVGWLNLLGQVAGVASTEFGLAQMIFAAVSLSTGGN
FVANEWQTYLLFLGLLIIHGILNSFGTRMLASMTRTFVFFNIGTVIAVVISLLVCTKEKN
SASYTFTHNINGSGWSSQGLTFLLGLLSVQWTMTDYDATCHISEEVKRASVAAPAAIWIA
VLGTGVAGWIYNIVFVLCSGNLSDLGELGVSGYAPAEILWRNVPEKLFYVLWAFICLIAF
QVVATATHANARSFYAFSRDKGMPDRGFFHKLARNQIPINAVWLVLFISALMGLLVFASY
VAVNAIFALAAMAMDTSYIIPIVARMIYANHPEVMFKPGPFTMGDGILGWAIRIVSVAWV
STVVVILALPTIRPVIPTNMNYASVVTLGVVFIATLCYLGIGRKIYRGPRNVLAEEGITP
KALTGDDDLKEVK