Protein Info for mRNA_2918 in Rhodosporidium toruloides IFO0880

Name: 11286
Annotation: HMMPfam-Acetyltransferase (GNAT) domain-PF13523,SMART-Siderophore biosynthesis protein domain-SM01006,SUPERFAMILY--SSF55729

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 PF13302: Acetyltransf_3" amino acids 90 to 247 (158 residues), 31.2 bits, see alignment E=3.4e-11 PF13523: Acetyltransf_8" amino acids 96 to 254 (159 residues), 151 bits, see alignment E=2e-48

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (275 amino acids)

>mRNA_2918 HMMPfam-Acetyltransferase (GNAT) domain-PF13523,SMART-Siderophore biosynthesis protein domain-SM01006,SUPERFAMILY--SSF55729 (Rhodosporidium toruloides IFO0880)
MELGATKRSPRYTISRSAIFQLYTYASDVPETHHAPRAPFPYLPVTPPEGSPSTLTHPLR
PPKPNASSLLYSRFLPHLTTDPQSPVYFKLSTCTLKDLPTLHNWMNDPRVDQFWMEKGSM
EQHQQFIEKNTRDPHVIPVIGSYVELREENGQVRQQPEEQAVYAEIYWVKEDRLAPLMPA
GTVQDYDRGLHMLVGSNAHRGPHRIRAWMPSLAHYCFLDDPRTQRVICEPNEKNEKIIKY
MESIGFKRHGSVTFPHKTSALMILEKEDFYSLCPF