Protein Info for mRNA_2925 in Rhodosporidium toruloides IFO0880

Name: 11293
Annotation: K03030 PSMD14, RPN11, POH1 26S proteasome regulatory subunit N11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF01398: JAB" amino acids 1 to 98 (98 residues), 95.3 bits, see alignment E=3.8e-31 PF13012: MitMem_reg" amino acids 133 to 252 (120 residues), 49.7 bits, see alignment E=7e-17

Best Hits

Swiss-Prot: 76% identical to PSDE_ARATH: 26S proteasome non-ATPase regulatory subunit 14 homolog (RPN11) from Arabidopsis thaliana

KEGG orthology group: K03030, 26S proteasome regulatory subunit N11 (inferred from 80% identity to lbc:LACBIDRAFT_292836)

Predicted SEED Role

"proteasome regulatory subunit Rpn11" in subsystem Proteasome eukaryotic

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>mRNA_2925 K03030 PSMD14, RPN11, POH1 26S proteasome regulatory subunit N11 (Rhodosporidium toruloides IFO0880)
MLKHGRAGVPLEVMGLMLGDFVDEYTVRVIDVFAMPQSGTGVSVEAVDPVFQTKMLDMLK
QTGRPEMVVGWYHSHPGFGCWLSSVDVNTQQSFEQLNPRAVAVVVDPIQSVKGKVVIDAF
RSINPQQVMMGIEPRQSTSNVGHLQQPSIQALIHGLNRHYYSIAIAYRKTDLEQSMLLNL
HKKDWTEGLKLRDWQAMKKENEESIKRMLQLAQTYTASVKEEATLTPQQLKTRHVGKQDP
KRHLEEAVEKAMGDSIVQSLGTMLSLGAL