Protein Info for mRNA_2943 in Rhodosporidium toruloides IFO0880

Name: 11311
Annotation: KOG1902 Putative signal transduction protein involved in RNA splicing

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1084 PF04146: YTH" amino acids 670 to 1019 (350 residues), 195.6 bits, see alignment E=3.1e-62

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1084 amino acids)

>mRNA_2943 KOG1902 Putative signal transduction protein involved in RNA splicing (Rhodosporidium toruloides IFO0880)
MSARTDSDAGTRDDQTGRGKVEVGNSSQATAGAEGTTSEAELVKRLDASLSLRGNGATPT
QGGRPAALSVAIPSPPLVSAATTGGRSTSALDHHPPRPGLHSVHSSFATTYSSRSPASRS
TSNTSIHESVGSAPYVSETTSASYLSGAYGSHQQAQHPAQGYPYATPHVHFAHSRQVSSQ
ASSGARSPSVSSSSDVVFHGHHGMSAPQGYGPPPSAQAAFYAQYAPQQPAPQPIYHQLVY
PQTSAVPYTNYSPAAPAPQITYCTVPSPAPAPYAPYYASTAPVPVPTQVLVNHEGNVVYD
HDGNPLACPPPPPHPPQQAQSQQPYFQPVYVYPQQPPQGVMYPSPSPPQPSQGAPYQPVY
FSSPFHAAQLQQQRAPVPPPPPAPAQGPSPDAGESDIAYPISARSSISSPLSTGLPSSLG
YPSPAPPAPYPLSPPSRRASFAGLSPSMHLISPSSHFSPVFSAAGASQVSPGVSRGRGEA
YGGRKDLPRPPAHSPHALWVGNVPSDASHAELWQFFQTRPTPRECGITISPNEMGVDLES
TGVESIHLITRSNCAFVNYVSNLHLHHAIAVTNGTSLRSDDPRCKPLVCRVRKHEDDAKS
GVGAQRMGGMHRAFVREQQVRMAERQREIARSEGEEAAGEAGKGRRMSAGASSIGSTSTT
STFLAKHFERRYFILKSHDEADLRKSVETGVWATQPHNEPVLQQAFRTARSVYLIFSANG
SGCWFGYARLSGPVGGAGGSSSRSSRFSFTSSAGERSADLRKSQRSATILEETDEPASAP
AATHLFSPSEHRWADQSPSVITPSSAAILDSSTATPVQGGSTGSLAVPVKAGGAEGNSAP
ASLAVAVPDSAQRAMSRSQDIMALETAENLHLPPDVAAQAKQRRAASFDVAPTKVGDVPR
PTAKEEAESPTKGIFAAAAEARNAKLEKMEAAIDESRKSNGSSGTIGAPAAGEENRAGDN
RHSSWGTPFAIDWIAVKKLPFSRSRHIRNSFNGNREVKISRDGTELEPTAGELLLNEFWR
SDGIAPPSSAGEKVEVPLRPASPQPLFPGAGTSALRKQDDEGTTPRQVGGMVGAGSGSAS
GSER