Protein Info for mRNA_2948 in Rhodosporidium toruloides IFO0880

Name: 11316
Annotation: K12817 PRPF18, PRP18 pre-mRNA-splicing factor 18

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 PF08799: PRP4" amino acids 128 to 155 (28 residues), 43.4 bits, see alignment (E = 2e-15) PF02840: Prp18" amino acids 258 to 397 (140 residues), 204.1 bits, see alignment E=1e-64

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (426 amino acids)

>mRNA_2948 K12817 PRPF18, PRP18 pre-mRNA-splicing factor 18 (Rhodosporidium toruloides IFO0880)
MDWLKQEIASKKRQLESLSPSPSPHPTDSAASTSTEPPKKYLKRSEIERLREEEQARERE
LREKERREKLYGTASSARAGEKREGSVGAGGTPKRARSTSATPDPASLSTKHHAAAGEAF
NISNDEAIRRLRQKGQPIRLFGESDKDRRLRLRALELLDAEREGPIGQRNEFQRALENKE
KEAELEEIARRGGGGTKVDALKKKGRENGSASATPEPSASKDSGLDKKEPNPKDEDVLVD
LDLVRTNPHKVYPQIYHALKRVLKEWEQSLADRPESVKRSAQGKIAAATQATSAEYLKPL
FKSLRKRELEADVLRNIAEITHYMQTREYLRANDAYLRLSIGNAPWPIGVTMVGIHERSG
REKIFSNNVAHVLNDETSRKYIQSLKRLLTFAQAVRPPDDVSQKCVLTLSLPPSFSTRFA
RLAVLT