Protein Info for mRNA_2975 in Rhodosporidium toruloides IFO0880

Name: 11343
Annotation: KOG3072 Long chain fatty acid elongase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 transmembrane" amino acids 39 to 56 (18 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 171 to 215 (45 residues), see Phobius details amino acids 226 to 244 (19 residues), see Phobius details amino acids 286 to 306 (21 residues), see Phobius details PF01151: ELO" amino acids 40 to 315 (276 residues), 193.1 bits, see alignment E=3.2e-61

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>mRNA_2975 KOG3072 Long chain fatty acid elongase (Rhodosporidium toruloides IFO0880)
MTSYAAHPRASSFLASFADGPKPPTPTGIPAPLASTYDLFLNPVTPLAFGLVYFATAKTL
SHFQNGKNRIKGKGWDVAVLVHNILLAVYSAWTFLGTAPQIFGAFVRGYMADGFAGLTHA
FCDSSFAIWQQTTFPKFAYLFYVSKFYEIVDTAILLLKGKKVGMLQSYHHMGAIWTMYAA
YATQAMPVWLFVVFNSFIHSIMYTYYAFSTVSLPFPRFLKKSLTRLQITQFLVGGSLAAS
YLFIKLPELPSAEEMSAAATSSFEAGVGALKREGPTCLVNAAQRHATLLNCAYLVPLTYL
FVAFFFKTYQKNSAANAAAKAKANAKKAN