Protein Info for mRNA_2980 in Rhodosporidium toruloides IFO0880

Name: 11348
Annotation: KOG3140 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 87 to 89 (3 residues), see Phobius details amino acids 94 to 124 (31 residues), see Phobius details amino acids 153 to 171 (19 residues), see Phobius details amino acids 182 to 200 (19 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details PF09335: SNARE_assoc" amino acids 83 to 204 (122 residues), 61.8 bits, see alignment E=4.5e-21

Best Hits

KEGG orthology group: None (inferred from 45% identity to aag:AaeL_AAEL014573)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (244 amino acids)

>mRNA_2980 KOG3140 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
RPLLYASLQAAAILLVSALGMYIVLKVTLPPIDEGDRDKVKLPKSFEDLKELNEVLQVYR
DRNYYRVMGCFVIVYLFLQAFSIPGSMYLSMLGGALFGVLVALPLVCFCVATGALLCYLL
SALLGPSVLANSSIWQARVEAWQERVRGHEKNLVSYLIVLRIAPLPPHWMLNLAAPHVGV
SVWKFWLSTFLGVAGVSYIHTQIGTTLDQMAGSDDLHLVTWQNACGLGGIIVAVLIPVFL
RRLF