Protein Info for mRNA_2995 in Rhodosporidium toruloides IFO0880

Name: 11363
Annotation: K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 854 PF04136: Sec34" amino acids 147 to 293 (147 residues), 165.1 bits, see alignment E=5.3e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (854 amino acids)

>mRNA_2995 K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3 (Rhodosporidium toruloides IFO0880)
MASARASTSRYSIDDWDQLAPLSPAQSQSVHRVSQLAQVKPVPQHLVAASSSRPSTPSSS
ALLRTAPRSRSRLDLAQLLTGSPSGSPRPGSARPPALPGVGEAATDSPDPLFVLREPIST
AQQFHDWFSLVESSLERSQESVYVDHLSELVSHLETCDNVLAALDESRGLLSEMEANYRY
VDENSRALQMACETMLEEQKHLIEVTEAIGARLEYFRELEKATRVLNLPGEEIVLKEDFL
NMLDRLDVCLEYLKANRDFLDAEIYLIRFQQCLTRSMTLIKMYFVTTIRRIAAEAQEKMG
GKELSETALNALLYAKFTSSAPTLRILLVELEKRASADPAEYASLLSECYSTYFASRSAL
LGPGLKEEVRRMEPDKTELVRLAKMGCAYLRGVCATEWGLFREFFAMGENDVYVFLESVC
DTLYDSLRPRILHEPRLSSLCELCAVLNAMMALDSSPHPSSAKQDEEEDREGDGMRFSIL
LQSLLQDAQTRLVFRAQAVIQSEVLHYVPSPFDLDWSDKLSTNTRSSGGLWEEQEGEEGG
KGRFRVPREERMVGWYPTLRKTVWVLERLNAYVNDAIFQDFAAEAVTLCLQSLISASLLI
SSRPAASDTKTEDTEDRRTDGYLFLIRHLLLLKEMVRSVDLRHVERAADWSSVTEALSTL
LRNTSTLFNPRALVDLASKGMPNFAETMTDAKSDLDLALKKACEELIAHLALTLTSEIRA
FLDRCTAFLSSPSPSSTSSSARDLPSQPFATPDAVLTLHESFASTIRPRAEGVVERMQKW
LEEDKTVRVLVGPLWEEVGEAYGTFYNLVRSEYGFETSSSLTSPDEILVRLKAAGQGQGR
LQEQDGPAEQENKE