Protein Info for mRNA_3012 in Rhodosporidium toruloides IFO0880

Name: 11380
Annotation: K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 PF16891: STPPase_N" amino acids 156 to 204 (49 residues), 65.7 bits, see alignment 4.2e-22 PF00149: Metallophos" amino acids 206 to 397 (192 residues), 125.7 bits, see alignment E=3.6e-40

Best Hits

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (456 amino acids)

>mRNA_3012 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit (Rhodosporidium toruloides IFO0880)
MGNSSSKEKKAKHRATSASDDATPSSVAPQRHPGDGPSGTSPPGGSLSSGGSQQGGAGHG
GAAGSAGDAGGVDLTPSRSRSSTTASALSRTPTNTAPSNSLTPSSSSADVPAAQTILSNP
IAATPTSLAPSGAGPGAIGLLSTSPTSAPKQQTFDIDDMISRLLDAGYSGKVTKLVCLKN
AEITAICQAAREVFLSQPTLIELSPPVKIVGDVHGQYSDLIRLFEMCGFPPNANYLFLGD
YVDRGKQSLETILLLLCYKVKYPENFFLLRGNHECANVTRVYGFYDECKRRCNIKVWKTF
IDVFNCLPIAAVVASKIFCVHGGLSPSLSSMDDIRRISRPTDVPDYGLLNDLLWSDPSDT
ALDWEDNERGVSYCFGKSVIGAFLARYDFDLICRAHMVVEDGYEFWNDRTLVTIFSAPCV
DVFLISPPLDTAQLKRDLAKARRRLSSSASSTTAAA