Protein Info for mRNA_3024 in Rhodosporidium toruloides IFO0880

Name: 11392
Annotation: K20366 ERGIC2, ERV41 endoplasmic reticulum-Golgi intermediate compartment protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 transmembrane" amino acids 40 to 59 (20 residues), see Phobius details amino acids 304 to 323 (20 residues), see Phobius details PF13850: ERGIC_N" amino acids 22 to 109 (88 residues), 86 bits, see alignment E=1.9e-28 PF07970: COPIIcoated_ERV" amino acids 166 to 319 (154 residues), 132.8 bits, see alignment E=1.8e-42

Best Hits

KEGG orthology group: None (inferred from 48% identity to lbc:LACBIDRAFT_291298)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>mRNA_3024 K20366 ERGIC2, ERV41 endoplasmic reticulum-Golgi intermediate compartment protein 2 (Rhodosporidium toruloides IFO0880)
MQVGDENPPSYFASVLAKPPPLNAFDAFKKTNPTYREKTTRGGIFTVLVGLVVAVLVWHE
TREYLWGEAEYKFSVDRGIAHELQLNFDATVATPCHYLTVDVRDAVGDRLHISDEFKKDG
TTFDIGQAQHLENQRAAKEASASKMVRDARGRRIFARTRNLVENGPACRIYGSMEVKKVT
GNLHITTLGHGYLSWEHTDHALMNLSHVIHEFSFGPYFPRIVQPLDNSVEITSVPFHIFQ
YFLSVVSTTYIDASRRRLHTHQYSVTEMGRETQHGRGVPGIFFKYDIEPMSLTVRERTTT
FLQFLIRLAGIVGGILVCSDFGFRTADHLVSHFLAGPPKTPLPGFVPSPAPKTPTRSFAS
GFGRD