Protein Info for mRNA_3025 in Rhodosporidium toruloides IFO0880

Name: 11393
Annotation: K11354 cph1 two-component system, chemotaxis family, sensor kinase Cph1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1283 PF08446: PAS_2" amino acids 28 to 106 (79 residues), 36 bits, see alignment 2.9e-12 PF01590: GAF" amino acids 260 to 429 (170 residues), 49.3 bits, see alignment E=2.4e-16 PF00360: PHY" amino acids 440 to 609 (170 residues), 94.4 bits, see alignment E=1.7e-30 PF00512: HisKA" amino acids 636 to 697 (62 residues), 45.5 bits, see alignment 1.9e-15 PF02518: HATPase_c" amino acids 745 to 873 (129 residues), 74.5 bits, see alignment E=3.1e-24 PF00072: Response_reg" amino acids 1119 to 1245 (127 residues), 59.8 bits, see alignment E=8.7e-20

Best Hits

Predicted SEED Role

"Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-)" in subsystem Oxidative stress or Oxygen and light sensor PpaA-PpsR (EC 2.7.3.-)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1283 amino acids)

>mRNA_3025 K11354 cph1 two-component system, chemotaxis family, sensor kinase Cph1 (Rhodosporidium toruloides IFO0880)
MTSRFEHQVTEDGQILVLTGREGQLERCEDEPIHAPGAVQAFGVLIAFDLEEDERMKVQQ
VSENSGFVIGLPPRVLFRSKCLSELLDEDEADALRDAIDALDERDLDESNEEVGPYTFTL
AGEGIPGSGDRDAQSRERFEWVCHAAIHRPNRTLQPKRIILELELVEDQVNPLSTVSSEP
FTPDERGGMGKPEEYGENGINPTEADLVESTVSIAKPLRILARHRSTRVRRRKRARQGLE
EMDVVGLLSQINDQLGKADDLETFLKVTVGVFKELTEFDRVMIYQFDEMWNGRVVAEQVD
WSRTRDLFRGLNFPASDIPAQARGLYRINKVRVLYDRDQPTARLCCRSMEEVALPLDMTH
CHLRAMSPIHIKYLGNMGVRSSMSISITAFGDLWGLIALHTYGRYGHRVSFPVRQLCKLL
GQSISRNIERISYASRLQARKLINTATSDQNPSGYIVAKAEDLLDLFHADFGVLSIGDEA
KILGPVSNSQELLALLEYLRVKRFETLKTSQDIVADFPDIDYPNGFKLIAGLLLVPLSAG
GNDFIVFCRKGQLQEIHWAGNPYANKKVSEDGEQYQALEPRKSFKIWSETVVGKSRAWTD
EEKETASVLCLVYGKFIAVWREKESALAASQLTNLLLQNASHEVRTPLNAIINYLELALD
GPIPGEVRENLVRSHAASKSLIHVINDLLDLTRTEKGNELFLTDPFNLAETLEESVAIHR
DEAARRGLSLEIVETPTGTPSTLLGDRAKIRQIVTNVVGNALKHTKEGGILVEWGEVLTV
EDASQPKQDAIKIGISVTDTGVGISEQKLENIFRQFENVATIGDKERDEMADTEQAVGLG
LAVVARIVRNLDGQLQVESKVGKGSKFTFIFPFRLPPQDTATAHAIAQSIQQSLQREVKP
EAHRDSLVRRNSNGSAESRASRTSSGRSEIDSLINAMSQSHMDTKQPRSAGSRSTQSIRS
NPSFRSARSTMRQEAPPSETSSRGSVGISGGAIPLRAARVAPSRGGGEPTTSPLSSPTLA
KTQNPLNAIFNSPASPGKSPLSLGSAPPVESPPAERARRQSILSVTSEATANSTAADNTP
RAKSPEPDAKAGTASPTHVSEYRKSSTAPPVDTIEPMRVLVVEDEMVNRMIISQRLKKDG
HEVIVAEHGGAAVRKFEEDRNFDIVLMDLQMPIMNGVNASKNIRRIERESPLPEDQRRLS
TRLNDGIPILAVSASLPERERPTIVDAELNGWLLKPIDFKRLRALMRGAIDNDARHPEIY
RPGQWERGGWLTEMPQPDLAAKA