Protein Info for mRNA_3035 in Rhodosporidium toruloides IFO0880

Name: 11403
Annotation: K03661 ATPeV0B, ATP6F V-type H+-transporting ATPase 21kDa proteolipid subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 130 to 156 (27 residues), see Phobius details amino acids 169 to 193 (25 residues), see Phobius details PF00137: ATP-synt_C" amino acids 50 to 107 (58 residues), 57.9 bits, see alignment E=5.3e-20 amino acids 137 to 193 (57 residues), 44.8 bits, see alignment E=6.4e-16

Best Hits

Swiss-Prot: 59% identical to VATO_YEAST: V-type proton ATPase subunit c'' (VMA16) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: K03661, V-type H+-transporting ATPase 21kDa proteolipid subunit [EC: 3.6.3.14] (inferred from 67% identity to cim:CIMG_00265)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>mRNA_3035 K03661 ATPeV0B, ATP6F V-type H+-transporting ATPase 21kDa proteolipid subunit (Rhodosporidium toruloides IFO0880)
MGYTAGLTAYSGLALATLVAGYLTFTGSGTQFNPGQFLEQTSPYAFALVGLGLNIGLSVA
GAGWGIWITGSSILGGSVRTPRIRTKNLISIVFCEVVGIYGVITSIVYSAKLAASPSIET
LYSPSNYYTGFALFWGGLTSGLCNLLCGVAVGISGANAAIADAADPQLFVKVLVIEVFSS
ILGLFGFITALLISGKAFDFA