Protein Info for mRNA_3052 in Rhodosporidium toruloides IFO0880

Name: 11420
Annotation: KOG2404 Fumarate reductase, flavoprotein subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 631 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 5 to 207 (203 residues), 30.7 bits, see alignment E=9.3e-11 PF01494: FAD_binding_3" amino acids 5 to 68 (64 residues), 23.2 bits, see alignment E=1.8e-08 TIGR01813: flavocytochrome c" amino acids 5 to 456 (452 residues), 407.4 bits, see alignment E=3.6e-126 PF12831: FAD_oxidored" amino acids 6 to 190 (185 residues), 29.5 bits, see alignment E=2.3e-10 PF00890: FAD_binding_2" amino acids 6 to 444 (439 residues), 294.8 bits, see alignment E=5.8e-91 PF01266: DAO" amino acids 6 to 204 (199 residues), 52.7 bits, see alignment E=2.4e-17 PF13450: NAD_binding_8" amino acids 8 to 50 (43 residues), 34.4 bits, see alignment 9.5e-12 PF01593: Amino_oxidase" amino acids 13 to 43 (31 residues), 20.7 bits, see alignment (E = 1e-07) PF00173: Cyt-b5" amino acids 559 to 629 (71 residues), 72.2 bits, see alignment E=1.4e-23

Best Hits

KEGG orthology group: None (inferred from 62% identity to cne:CNJ00140)

Predicted SEED Role

"soluble fumarate reductase, cytoplasmic"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (631 amino acids)

>mRNA_3052 KOG2404 Fumarate reductase, flavoprotein subunit (Rhodosporidium toruloides IFO0880)
MATPQVIVVGAGLSGLSAAHTLYEKGGNVLVLEKNPFAGGNSTKATSGINGAGTKAQQAL
GIKDSAAAFFADTKKSARDLARDDLIEVLTGKSADAVNWLCDRFNLDLSKVSRLGGHSFE
RTHRGGEQFPGMTITYALMEKLEDLAESDPTRVKILKKANVRKLVKDGDKVVGCEYEYQG
KQHTAHGPVILATGGYAADFAQDGLLAKYRPELLKLSTTNGDHCQGDGQKMAMAIGANGI
DLEKVQVHPTGLVDPREPDAKVKFLAAEALRGVGGLLINKEGDRFADELGHRDYVTGRIW
EDNKRPVRLVLNGQAGKEIEWHCKHYVGRGLMKKFDTVADIAKEMGIEASKLQKTFNEYM
EICEGKRQDPFGKKFFHNTNWKNEAGPFFVAQMEPVLHYTMGGLEIDPRSMVLDSNKKPI
EGLFASGEIAGGVHGANRLGGSSLLGCVVFGRVAGDSAASYLLKSLSSGSGAVARLGQVN
NHLAPPSTTITIDPSTQQVHLTLNWSGQGQAQGSAGDVKPQGESTSQQPANEVSTAVKQD
EETKAGGGEKAAEQKEYSLDEVAKHNTKDDIWIAVNGQVLNVTNFLNDHPGGAKALLLYA
GKEASEEFNLLHDPKVVSRYAPDTVIGTYKQ