Protein Info for mRNA_3064 in Rhodosporidium toruloides IFO0880

Name: 11432
Annotation: K17617 CTDNEP1, DULLARD, NEM1 CTD nuclear envelope phosphatase 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 PF03031: NIF" amino acids 33 to 206 (174 residues), 169.7 bits, see alignment E=2.1e-54 TIGR02251: dullard-like phosphatase domain" amino acids 33 to 208 (176 residues), 197.6 bits, see alignment E=6.5e-63

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (219 amino acids)

>mRNA_3064 K17617 CTDNEP1, DULLARD, NEM1 CTD nuclear envelope phosphatase 1 (Rhodosporidium toruloides IFO0880)
PPSESRMLSPSPSPTPSPGIPRAPQPPPRLTPKTLVLDLDETLIHSTSRQSSSLARRAPK
GLKMRVVEVVLDGRSTVYTVYKRPWVDFFLRKVSSWYTVVIFTASLPEYAEPVIDWLDGG
DGRGGMVAARLFRADCMPRNGSYVKDLTVVEPDLSRVCLVDNSPASYAVNQANGIPIEGW
INDPNDECLLDLLPMLDSLRFTNDVRRVLGLRGFGKRES