Protein Info for mRNA_3072 in Rhodosporidium toruloides IFO0880

Name: 11440
Annotation: KOG1203 Predicted dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF05368: NmrA" amino acids 9 to 231 (223 residues), 150.3 bits, see alignment E=1.7e-47 PF01370: Epimerase" amino acids 9 to 75 (67 residues), 27.1 bits, see alignment E=7.3e-10 PF01073: 3Beta_HSD" amino acids 9 to 118 (110 residues), 29.5 bits, see alignment E=9.8e-11 PF02254: TrkA_N" amino acids 10 to 82 (73 residues), 25.7 bits, see alignment E=2.9e-09 PF13460: NAD_binding_10" amino acids 12 to 199 (188 residues), 66.9 bits, see alignment E=5.8e-22

Best Hits

KEGG orthology group: None (inferred from 39% identity to ret:RHE_CH02553)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (287 amino acids)

>mRNA_3072 KOG1203 Predicted dehydrogenase (Rhodosporidium toruloides IFO0880)
MPALSPVTLVVGATGKQGSAVIRALQALPQPPQIRALSRNPSSPAAQKLKDQGIEVVKGD
LTDSSSLDKALTGVASAFLVTTLPTKGQPTEDQQGKNFIAAAQRASLPFLVFSSVANATP
TIGIPHFETKAVIEEALETSGLRYAVVAPVAFADNYPTEAGFALTMALGFFDAALKGKKL
QLVSTDDIGYVVAEMLNDPSRFAGRHVDLASDSLTMREVQQTYSRVLGCRVSKAWLPGAV
ISLIPHDFKQMMRWFHDVGYSADIAALRQEFPKLKSFEQWLRDQRKQ