Protein Info for mRNA_3074 in Rhodosporidium toruloides IFO0880

Name: 11442
Annotation: KOG4650 Predicted steroid reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 45 to 63 (19 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 105 to 123 (19 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 284 to 304 (21 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details PF06966: DUF1295" amino acids 59 to 295 (237 residues), 102.8 bits, see alignment E=1.1e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (473 amino acids)

>mRNA_3074 KOG4650 Predicted steroid reductase (Rhodosporidium toruloides IFO0880)
MLKLTPHHATHSLLPAIRSFAADAPSSFRPADLRTWYLNPKTDPLHPAILFCTGISVVVW
LLGEVTGNVSQVDRLWTTLPLVYSAHFTFWPYWSGQVSHVAQLDHRMLLVFALQCCWSAR
LTFQSARRGFLDPRSEDYRWPLVRKAIPKPAFKLLNLVFIAFIQNFLLLAAELPQYLLLT
HWQSSSGHISTLAKLKPHHASTSTVPLNIADALLAVTFVTTLVFEMRADNQQQTFQRLKH
GGLDKQKKGQQITDSEKKAIERGFVAEGLWAWSRHPNFACEQTTWYLLYAFTVLPFLPIT
QSFASHPISTLRYLLTPSFLLSHTQKLLFTLSDSLPSLDSALTSLQHPLLYLRAHSSHLT
NHSFLRSEAAKVHLEALSAWNTIKSDEGHLWNYSIIAPLTMSALFFSSTMLTEQISAKKY
PLYKQYQKRVAKFWAPLTPLKGLYLTLSGGRKNRVERQIWGGGLDGGRKIKQI