Protein Info for mRNA_3078 in Rhodosporidium toruloides IFO0880

Name: 11446
Annotation: K01613 psd, PISD phosphatidylserine decarboxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1253 PF00168: C2" amino acids 87 to 191 (105 residues), 40 bits, see alignment E=4.1e-14 amino acids 548 to 644 (97 residues), 68.7 bits, see alignment 4.8e-23 TIGR00163: phosphatidylserine decarboxylase" amino acids 1030 to 1238 (209 residues), 124 bits, see alignment E=2.7e-40 PF02666: PS_Dcarbxylase" amino acids 1038 to 1248 (211 residues), 192.8 bits, see alignment E=5.3e-61

Best Hits

Predicted SEED Role

"Phosphatidylserine decarboxylase (EC 4.1.1.65)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 4.1.1.65)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.1.1.65

Use Curated BLAST to search for 4.1.1.65

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1253 amino acids)

>mRNA_3078 K01613 psd, PISD phosphatidylserine decarboxylase (Rhodosporidium toruloides IFO0880)
MSKAPTTSDSLHAQPPLAAGDTESTSPSPAPSPGLRRALLSKLPVRHLACIPKAAAAGPR
RLKQLGSRAQRRDALFRPLEDGAEPLGTLVVRVHAGRDLVAKDKNGLSDPYLVIRFGPHR
ITSPVVPKTLNPVWGAGGETGSLEGVGGEAKLELKLFDCLALGYERVEIVCYDKDRLGSE
YMGELSLGLEDWWGSDAKKWKDEKPPVGFHDSENEPIWHTLRSSRSRSSVSGQLLVQIGF
LPAATTSSRKLSDKDRERIFGALGRVASELEGARRASREERVFLVPPTDGLGTQPADEAS
PLGNVIDDPDSESSDSDADTASISTDGGDSDTEDASTTGDEEVPLAHEQGYFDLPTDAQL
EKSTSPENAITESPAPIPDIRVEEQAHASSSSSSSANVPIPPPTPSRRGLSLPGFVKRRF
SSQNILSTASQPTTPGAESDFASTTDIDSAATASSSIAADTKKRRRFPRRRKTADSDAGI
ADGLVEMSLVAGGIGFSPAAAPGKRKGRRRTTKAEDGATDGKRRRSRRSRKKHHGAFTLA
PNDGIAGLVQIEITGAKDLPRFKNAFRTSYDMDPFVVIAFGHKIFRTRVIRHSLNPVWEE
RLYFHVGEAETHWTIAFTVSDWDKISGNDHVGDVAVPLEQLLGTSIQHDDRGIYPAGPDG
KLVGDDFHVHELPLILSDKDAQGVNPKLIIRAKYTPYAALRQSLWRVYAAQYDLDGTGEL
SYVELFSMLDSLGSTLTKKTIELFFTRFGKTLDDELSMEEVVLCLEDEVQKPNAERRHVS
ENSDTGANTPAGPGAGFASGFAMPEHYQPDELQQADQSSDMKTIPPGTEIVTDTEKGKVI
TAPEPKGTVKPPSSPTGAESAEPSSADEGDIERVVNIKECPLCRKPRLNAKAEVDIITHL
GVCASTDPSKVNRVLVTNFVTASQAQRKFLNKVFAKVTKGQYALGADSANIIVQDRQTGT
LQEEKMAVYVRLGIRLMYKGMSGNMEGSRIRRMLDSLTKKQGLKYDSPASAREIEPFIRF
HNLNMNEVLDPLSSFKTFNEFFYRKLKPDARPVADPEDPRTVVSCADCRAMFFQTVDDAT
SIWIKGREFTVGRMLGDYYKDKASEYDGGSLAIFRLAPQDYHRYHSPVDGVMGHHDYIAG
QYYTVNPMAIRSNVSVYSENVRLVASIDSPIFGEVMNVWVGAMMVASIHMTKQEGEPVKR
GEETGYFAFGGSTIVVLFKPNTVQFDADLLNNSKNSIETLIRVGTRIGRAVGK