Protein Info for mRNA_3081 in Rhodosporidium toruloides IFO0880

Name: 11449
Annotation: KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 PF01926: MMR_HSR1" amino acids 249 to 396 (148 residues), 22.8 bits, see alignment E=8.4e-09 PF00350: Dynamin_N" amino acids 249 to 428 (180 residues), 139.8 bits, see alignment E=9.5e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (950 amino acids)

>mRNA_3081 KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins (Rhodosporidium toruloides IFO0880)
MVSALLRNATRARTRSPVLPFTLLRHPHPSTLAGAALPARQLHVRSVSIFTGLGKLAGRT
AGRGALGLGVGAGALTWAEWKVDGFKQNAVTTLSDINDKLGVAYDTASTSISSTLRSLTE
QGSETYKSVIETASTVWVETALGLEGRLAKFREKLRETFERKEEDEGEEEYGGEESGYTR
GNGKKPERDPAPLATVAATMAASLPVVVDAEEPSADSSEDLMLLTRRLIEIRSILLSIGE
EVGLTLPSIVVIGSQSSGKSSVLEAIVGREFLPKGENMVTRRPIELTLVHAPATPSNPRP
STFAEFPSLGPGHITDFSIVQQTLVDLNLSVPAAECVSDSPIQLRIHSPHVPDLSLVDLP
GYVQVASMDQPEELKDKIAALCDKYIRSPNIILAVCAADVDLANSPALRAAKKVDPLGMR
TIGVVTKMDLIEPAQGAAVLSNNRYPLALGYVGVVCRAAKHHSRSLLKRSNPADEEGSLI
GPIRQQEETFFGGNADEFSREGILVGTDTLKKRLMHVLEESMASSLHTISNAVALELEEA
TYQFKVQYNDRAISAESYVAETLDLLKAKIGTLGKSLTKKDVRRLLKSFLDEQVLDLLAS
QYWSDPRTPELGTLANDRSISPEDLDVYWQRKLDALASSLTKSGVGRASTQLVVDAIRAR
LATLAAEEPLIYHPDAAERINATADAILRERFTLTSDQVENSVKPFKYEVEVDPAEWEAG
RQQSVELLQRELSMCDAALSKIRDAVGGRKLRGAMEYVGELEEKERRRRERRREARLAGQ
EDWADENEDLADPNRPAFNPALLAKAREAMFLSSRSSILRLRLLALKSRRCKTGPEQKAF
CPEAFLNIVADKLSSTAVQFINIELLVEFFYQFPRDLDTRLSHDLDRAEIVRFARENPVI
SRHLALQERKEKLELVAEKLDSLVKLQRDKAQQQHPRQRQDGRRGLFGMF