Protein Info for mRNA_3101 in Rhodosporidium toruloides IFO0880

Name: 11469
Annotation: K01490 AMPD AMP deaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 934 TIGR01429: AMP deaminase" amino acids 329 to 860 (532 residues), 949.6 bits, see alignment E=4.2e-290 PF00962: A_deaminase" amino acids 418 to 824 (407 residues), 409.6 bits, see alignment E=5.5e-127

Best Hits

Predicted SEED Role

"AMP deaminase (EC 3.5.4.6)" (EC 3.5.4.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.5.4.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (934 amino acids)

>mRNA_3101 K01490 AMPD AMP deaminase (Rhodosporidium toruloides IFO0880)
MADTIDSLRPPLTTHDSSTAPTPSGSNPSSAPGSPKHPFFDYRDERSHLTDAGAFRAELP
TAIPPPVASTSVPSSHTLTGQPSLEHLSLSNPSLSPAPSSPSGSTTSTSHTRTRSRSDSL
ASKAKVKGDLTSPRIANLGLSPIPGTPGGLASVAVEDQEQKEGQANGLGLLEEAWNGAKV
DHGAPVLNAEREEADEIDEVFTAQNPHEALTAELRALYESFQRCLDLRDKYMSLSRQRLE
DNPANYDGHFSPSSSPSYAATSYIRPVELPKDFEKWRIYPPPPEPHWKERDPEATEPPVV
EGAGEGTSEEERVRFDFGRCEVPAREEGRGRTFRLDEGGVYQVYDEDSPTTPLYTVPTLK
QYFQDLDVVLNVISDGPTKSFAFRRLRYLESKWNLYVLLNEYRELAEMKRVSHRDFYNVR
KVDTHVHHSASMNQKHLLRFIKFKIRRSPNEVVIYRDGKHLTLRQVFESLNLTAYDLSID
TLDMHAHQDSFHRFDKFNLKYNPLGESRLREIFLKTDNYIEGRYLAEITKEIFSDLQQSK
YQMAEYRISIYGRSTAEWDKLAKWVIENELFSDNVRWLIQIPRLYDVFKKSGGVNDFQEV
VRNIFEPLYEVTADPSSHPELHVFLQRVVGFDSVDDESKAERRLYRKFPVPKDWNTTQNP
PYAYWLYFLYANITSLNNWRHERGFNTFWLRPHAGEAGDTDHLTSAFLTSQSISHGILLR
KVPALQYLFYLKQIGIAMSPLSNNALFLTYERNPFPNFFRTGLNVSLSTDDPLQFHFTKE
PLLEEYSVAAQIYKLSPADMCELARNSCAQSGFEMEIKRHWLGQDWYLPGKDGNWIHKTN
VPNLRAEYRRATLQEEMNMIAMVKENPSALDNSAVEQATSSDAAASSQAPPLSQRAQEPL
MTSDNVGAAAMGASGTNLHMPGLNASGSASVNGR