Protein Info for mRNA_3105 in Rhodosporidium toruloides IFO0880

Name: 11473
Annotation: KOG1515 Arylacetamide deacetylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 transmembrane" amino acids 33 to 39 (7 residues), see Phobius details PF10340: Say1_Mug180" amino acids 176 to 292 (117 residues), 43.2 bits, see alignment E=2.6e-15 PF07859: Abhydrolase_3" amino acids 181 to 400 (220 residues), 98.6 bits, see alignment E=4.8e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (482 amino acids)

>mRNA_3105 KOG1515 Arylacetamide deacetylase (Rhodosporidium toruloides IFO0880)
MSLPQDLDMDKLPTQPYSSPRLLKWLYCTQRVSASLALLPYWAIKYAIGHRPRPSWSIAE
TLLIDFTRRVSAITDRAGVQHATRDPCEEPKRDALKETRFEWVPGIEGELHVGAVVDEQV
KPLKRVGTFIWERAEDVREDYAMLNAKDADLAAEDSSDAGSVFGARNSGTEGGDRGDLVG
VYFHGGGYTHFSADECAQTSMIPRRLMQHDYFAAIHSVEYRLLPHPFPAALQDALSVYAH
LLRSGVPAHKVILIGDSAGGNIVLALARWIRDEKKLAAPGGLLLLSPWCDPSHSFPHSTT
SYVPRPNPEDYLPDEPGARRLLVTSLLGNKPHSFLTSPYISPASQLGPHGSFADFPPTFI
HYGDAERLEEEIDSLVRGMKRDRVDLLDVEKTKDAVHDVLMVRFWNEEVRAEIYRRICEW
LDRVVARGKKMDRGEDPNAPVAGSSSRAMSKDVEAHGQVAAHVEPAREDIEETAGRPSKL
HK