Protein Info for mRNA_3111 in Rhodosporidium toruloides IFO0880

Name: 11479
Annotation: K09788 prpF 2-methylaconitate isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 PF04303: PrpF" amino acids 6 to 71 (66 residues), 53.6 bits, see alignment E=9.1e-19 amino acids 99 to 439 (341 residues), 83.8 bits, see alignment E=6.2e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (445 amino acids)

>mRNA_3111 K09788 prpF 2-methylaconitate isomerase (Rhodosporidium toruloides IFO0880)
MPARGIPASFWRGGTSRGLLFRAEHLAPYSPVVRERLILTALGSPDPAGRQISGLGGGVS
SLSKAAIVSVPGEARAEQVIHGALPGVSWADDSERNGQTWDIVYRFAQVGVKEPVLDWSA
SCGNMFTAAALASIATPLIPYSTLFDRSRSLPRPADGQPVLFPLSVLSASNGVLMRARVP
IDPLTLLPWEPEPGQGVEIAGVPGRDEAGIEVEMPLEASEGGGAGLVTGNAQDVIKLEDG
SEVTVSILTSGLPNVFLPISSLATLSTLSLPDNLLELAPPALSAIPSLSSTLEDIRTSAA
RQFSIPLSLASPKITLIGPVPTKGYSTTSGTQVAPKGADIHVRAISSGDWHATIPGTTLG
ALNVGAGTPGTVIHELISSRRKDGASRAAEKGGDEVVTVRAGHAAGVAESSVRFLNGRPE
SVVMVRTAREIMRGEVMIPEKVFVE