Protein Info for mRNA_3113 in Rhodosporidium toruloides IFO0880

Name: 11481
Annotation: K11361 SPT20, ADA5 transcription factor SPT20

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 PF12090: Spt20" amino acids 14 to 174 (161 residues), 93.1 bits, see alignment E=1.1e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (310 amino acids)

>mRNA_3113 K11361 SPT20, ADA5 transcription factor SPT20 (Rhodosporidium toruloides IFO0880)
MSSGATYNVTRFTRQVLKRHRRAPPSLVIHLYPTHFRFEHQHGNFAYDSPMKCFLEAVRE
QKLPTDLLEVLDESGVVYYDGCLIVEVHDHRDSAPASGASRASLSLSLSQARETPAMSRA
EVYRIVLAPNPATLWTELGIMSRRMEQEAAAERREDTVGWTEEEALEVESVILTNRVANS
MLRATTLRPPKRKRFCSSGDCEDDEDGEEGQKKEREEHEKLMKVGDEGVPRTKASRALLS
SRRTENGRTTRLSPLSQARVRRRFALEALPLQPLPPKADPCRPRADSRELSRRPLRPPRG
DRRRRRQATA