Protein Info for mRNA_3136 in Rhodosporidium toruloides IFO0880

Name: 11504
Annotation: KOG2615 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1547 transmembrane" amino acids 45 to 67 (23 residues), see Phobius details amino acids 87 to 110 (24 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 365 to 389 (25 residues), see Phobius details amino acids 779 to 802 (24 residues), see Phobius details amino acids 821 to 844 (24 residues), see Phobius details amino acids 852 to 869 (18 residues), see Phobius details amino acids 875 to 898 (24 residues), see Phobius details amino acids 910 to 932 (23 residues), see Phobius details amino acids 952 to 975 (24 residues), see Phobius details amino acids 1386 to 1405 (20 residues), see Phobius details amino acids 1418 to 1437 (20 residues), see Phobius details amino acids 1450 to 1481 (32 residues), see Phobius details amino acids 1493 to 1517 (25 residues), see Phobius details amino acids 1526 to 1546 (21 residues), see Phobius details PF01529: DHHC" amino acids 275 to 400 (126 residues), 106.9 bits, see alignment E=8.8e-35 PF07690: MFS_1" amino acids 783 to 966 (184 residues), 54.2 bits, see alignment E=1.2e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1547 amino acids)

>mRNA_3136 KOG2615 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MLDCQLDKDGNPRPKRPIPKIIGIRQHMEIQRVKQMEKQGPDSWLVRKFAVGVVAGIFGY
SYYVYVVRLCIPMIRMESDRLGGRAQGLAYLVIFHFLFVMFVWTYCVAVTTAPGFARDYV
PKTDPPQAQEEYITVHEDDQVAESNPAAGALGPAIGAALANAKSPPPDSPRTPEVLSSSA
NGNGLSTGDDGERGRHDSGGSVTLVHSASSPAAPTFPPKVHLSNGTNGAEPQPRTSQSSA
APSYLHFAEPPEDWEPPKRLAVERVPNSAPVLTEQYRYDPREGIVRPYRSRRCRHCAAIV
LKMDHHCPWVGSCVGARNYKYFYNFLQYSTLYTFFVFLTLLIAQTLPLGTFTSTRPYPGV
DGQQVAIITLSFLFFLFTCSLFTAHTMLILRNMTTIEEISAKRMRQRERAALSSTFKFLQ
WRAKRDTVREWNKQWGRIGKEGNLWWLGSNRANWEMVMGKAKLGWFLPIPARPTHDDGLH
YVPNPRFSPEGYWRHSFTPLVWLCERVAISGSSPSRGCRPRLATLAPSCSLDSWLLLSCR
LHRVTIARPHRSLLADRPFVRLLLFRLLDDAQTDPLTPRASGSSTPDPSSLSSSPLPDTP
ISFKRRQASSSRNVRDKAASLLGGFLSRSNSDMDSTPPSLQRPDAPTHITLPRNLDHRGP
SDSGFSQAVADEEEDEAQLTATEDDGAAGRSGFSAAVTGGRSWRRRQGAHPHGRIPSFAA
GRSRRSTGTGMLSPHYAKEPGLLSPDAAFGGAGAGGGGDIDEDIDSGPVVVTPLPKIPIL
VLSICMLGEFLSASVCAPFLFFMVESFGVGENGGGESAVSLWTGVVSAVFFLSQFLTAMI
WVSVAEKHGRRAVLFASLVGTGCTVMLFGTSKNLGTAICTRLAMGLFNGAVGVARSAVQD
VTDETNRSTAYTILGLLWGMGGIVGSVLGGTLEHPVEKYPRYFGDSERFVEYPYLLPCLV
AGSVTLFGGFLSLFLNRDGGQRTGGIHLPTEKDVEVAASRLSRAKDWLAARLSPLFAKMP
RFPRRPPIQLSQSSGAVSLHTPTQGAPPPLSSPTDTAAERNPLADRRASFRQYGSAYGYS
SSRRPSQSGFERDSGLRIPSMRRRQFRSVSMATSARYDPENEVDHSFAERLLLANNQAVF
SLSDVFLAKAAADDQFTAIEYEGSVFERDDDEESRIEGIEADANSEYGDIGFGTAPPSME
DLRGEAARQAVQHDKDTSAAAAGIPRPTSPVSSAAPRRANALVSPNRERVVSYAPSAPRL
RRFSNASSVRPMSIYSNTGLAPETIASSAAQLVAVSAQQPNESAFAPMAGIPESRPASIV
EHPDEASDAGTAVPEPGPTALLWSLPLAMICQYLCVGLHGTACDQLFTSFLVTPLASGGL
GLTADHYAMLVAIMFFFSMVWQFKFYPTVGPPTGPLSHLSMFRLGLILYVPVYLLFPELR
GLIAVEGENGLVFLGMVVLSALRYLANACAYTAVMVLINVMTPAELVPLANGLAQSCISL
ARFIGPLLGGSVFAASIADPQNAHPAAGFRLIAAFCFAGFVLSWRIK