Protein Info for mRNA_3149 in Rhodosporidium toruloides IFO0880

Name: 11517
Annotation: K17917 SNX1_2 sorting nexin-1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1025 transmembrane" amino acids 902 to 922 (21 residues), see Phobius details PF00787: PX" amino acids 540 to 653 (114 residues), 77.6 bits, see alignment E=7.3e-26 PF09325: Vps5" amino acids 676 to 896 (221 residues), 154.6 bits, see alignment E=3.4e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1025 amino acids)

>mRNA_3149 K17917 SNX1_2 sorting nexin-1/2 (Rhodosporidium toruloides IFO0880)
MEGFRRDSSGFGDLMTTSSSMYGVGSTYSAFGDAGDDDLAANPFADLASSSHLPPVQPAS
PQSPFQSPRQERQALVSPTVEAPQYVEPEQTPFSPPAPYSPPAPAKELSPPVSPAAYEPP
PPATPIAPYERAFLREAAPEPETPAPPPPPTLQPGDPAGFSYNPYADSSFPSRFAPSSPP
APTSPTLPQSPSRQKPDLSALLGDEKPATPSFRKAERHGADALGGKGALPTSSVGRKPVA
KPLAALLGLEVEEDKSASSGSSAGKEVTPTAPSQPGPAPAPSSAVKPSALETPLPPSPAP
SPAPAAPASPAKPPKLSRVASEAPSTSSADSTGVNVRYESMVSPLETGDTPREDGERRNA
AWPANKPVEGIDEQLAGLKIDQSAPKEATPASEEAPAASEPPASTPSASAYSQYIFSEET
STSASPEPSDLSRRPSYIDSGSRGFRAFNGSSDDGGFGAGDDADSVRGTYSRSVEVGEAE
DAETETTGASTPATERTIGVGDSVRSEREGSAPLPPLPTQTPSVQGSPRSTQLGGSLGPT
FIITVGDPQKVGYNPATQHTVYTVRTRTTSPAYRKNDFSVLRRYSHFVWLYEALTQNNPG
VIVPGMPEKHAIGRFGSEFVENRRLGLQNALNKIVSHPMLVGDPDLRLFLESDSFDIDIK
QRKIDTSADNKGLLASLSSSISGPKFVEFDDYFDLKRQQLEAFETQLRSLITALAAAAKA
RSTLQASVAELQSAFLALAQCDLSSSLRKLFDEAAAVQKKVYDLAEAQSVHDEQIGGLIS
VAESYARLCTSARGVFGARIKAYNTWQAAEANLRKIQSAHEKAKRTGRTHSELLNLSVAE
ISDAERKMLDARHDFDDVSKLTKAEMARFEKEKVDDFKKALEDFADTMAARQREVRALVR
RLSLLLLTYGYVCAGRPGMAALPRPPRRRRRVEQGSCFGAGVLRDRASSFLGSVSRRRRP
LVRSRVPLRNTQTPASHPGVAFARARRRGPHRSDPRRLSCFVRQRFSSSSAAGARVESSA
VAVQQ