Protein Info for mRNA_3152 in Rhodosporidium toruloides IFO0880

Name: 11520
Annotation: Interpro PET assembly of cytochrome c oxidase, mitochondrial

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 123 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF15786: PET117" amino acids 5 to 91 (87 residues), 60.6 bits, see alignment E=7.3e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (123 amino acids)

>mRNA_3152 Interpro PET assembly of cytochrome c oxidase, mitochondrial (Rhodosporidium toruloides IFO0880)
MSRMAKALFAGSVLFCGASIWGVHMIQVREREVSAESLLLALCDRLTMLPQTMFAGVIRD
EERLAAKRAQKERQLEFEDQARKRAYLEQVQSVSQALVPPPDVKGEVPKSADGLDFGCKT
CER