Protein Info for mRNA_3176 in Rhodosporidium toruloides IFO0880

Name: 11544
Annotation: K17301 COPB1, SEC26 coatomer subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 977 PF01602: Adaptin_N" amino acids 27 to 497 (471 residues), 334.6 bits, see alignment E=3.2e-103 PF12717: Cnd1" amino acids 120 to 173 (54 residues), 27.8 bits, see alignment 7.6e-10 PF07718: Coatamer_beta_C" amino acids 699 to 836 (138 residues), 189.5 bits, see alignment E=8.3e-60 PF14806: Coatomer_b_Cpla" amino acids 842 to 969 (128 residues), 200 bits, see alignment E=3.7e-63

Best Hits

KEGG orthology group: None (inferred from 65% identity to cnb:CNBG1990)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (977 amino acids)

>mRNA_3176 K17301 COPB1, SEC26 coatomer subunit beta (Rhodosporidium toruloides IFO0880)
MATTSSAPCFTLVAEDPGSDSLASLQTADLRAALEKGTDELKLDTLRRIIVATLNGQPQP
ALLMPIIQFVLPSKSKQLKKLLHFYWEICPKLDENGKLKQEMILVCNAIRNDLQHPNEYI
RGATLRFLQKIREPELLEPLVPTCRACLEHRHSYVRKNAVMAIFQIYKNFEYLIPDAPEL
IQTFMAAESDTTSIRNAFTMLQAVAPSRAVEYFLSIYDQVANLDEMMQLSVIELIRKEAP
SAAEGSLKARYIKCIFELLNSGSHSVKYEAAATLTTLTQNPAAVKAAASCLVQLVLSEPS
NNVKMIVLSRVAALHQKHEHVLDDLVTDLLRVLASPDMDVRKKALAIAMDMVNGRNVDDV
VGFLKKELARTTDPSFDKATEYRQLLIQTIHTCAIRHSEVASSVVHVLMDFLGDASNASA
VDVVAFVREVVEKFPDLRQGIVAKLLDTFGEIKSGKVFRGAMWIVGEYAGSVEEVRQAMQ
QVRKVIGEVPILASEQRLLDQAEQDAAAEADLTNGDSALVQKPTATSTTRVLADGTYATE
TVFSSSSATAAASLEAVKAAAKPPLRALILGGDFYTATVLAATLTKLVMRFKELVEAGEA
RAVNELRAECMLIMTSIIRVGQSHFASVPIDEDAQERIMSCLQALAELDNASANPDRARV
VEEIFLRDTQAAYAKMVEHEEKKALEKKKREDKAQAVQADDLIQFRQLAKKQGGADVADE
YETDLTKATGATDAAKDDFVSKLQRVVQLTGFSDPVYAEAYVHVQGFDILLDVLIVNQTL
ETLQNLTCEFATLGDLRLLERPVPYTLGPQSFQSVKATIKVSSTETGVIFGNIFYDGAHT
TDSHCVVLNDIHIDILDYITPAYCNEAQFRSMWTEFEWENKVNVNTSIDDLRTYLQHIMS
STNMACLTPDAALEGDCGFLSANLYARSLFGEDALANLSIEKLADGTLQGHVRIRSKTQG
IALSLGDRITISQKNLP