Protein Info for mRNA_3183 in Rhodosporidium toruloides IFO0880

Name: 11551
Annotation: HMMPfam-Cohesin loading factor-PF10345

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 754 transmembrane" amino acids 55 to 75 (21 residues), see Phobius details amino acids 98 to 114 (17 residues), see Phobius details amino acids 633 to 650 (18 residues), see Phobius details PF10345: Cohesin_load" amino acids 253 to 721 (469 residues), 51.3 bits, see alignment E=3.5e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (754 amino acids)

>mRNA_3183 HMMPfam-Cohesin loading factor-PF10345 (Rhodosporidium toruloides IFO0880)
MENGSYRPPDDHPSPTKKRKLDSHSASLDIDATAHSAFSGPASAPAPVQLSNLPAPVALF
ALATSLRASAAALLPHLSKRPSSSSASSQARYTATWSAYVHYTTSAIVLLRAAVRLTAGA
SEWSGGRVELRANALLAETLVDTYEGTGNEKQVAPEAEKAITRALAISESHPSLKPFTLP
LTLLHLRLAILTGKPSKYVRTNLRRLVSTLPALSPTSPASTAAAHYALQSFVVNLPTAGT
DAAASTNTIATWQEKLQAWQSVQELASQHGDASVRVLALLAEAQLLLIRSPSDYSRAGSI
LTSLFTTLGTDPSSEEWPRTVKVLYRLVYCLWKSQMGEAKEAKDVLKNTHKLLDAQVEQA
EIESDQVQLAFASANNDSAGSMSFRVPPHPTLYTFAFLASAAIHLDPLGKSPRSGLFAEE
GVRIAESKLGAREATQPVTSLAFASQNLHAVASLKVHFHLLLASLGTMRSSYTTAETHLS
SALSSLRAYNSSSWTTSEAALKILFGWAQIRMARAAKGGQDEKEAEEALEAVIFACEKRR
KEGKEGGIAEHLKNVAMLSLLLLRLSSSTPSAPATTPTETLIRALSASEPSCTSSAHSRL
IHSLAQALTVPSITASKAALSAALALANQMQANHVRVGVLALLANVFLWTREGEAQKMLI
SALKLAQSMGSAADRSYTYPDAPGSPPIVIGNARLGLWLGERLLESYRSDSSLQKTDEGR
QKLVAQERVNEACRRMLELDEAAAAQERVVKMKA