Protein Info for mRNA_3186 in Rhodosporidium toruloides IFO0880

Name: 11554
Annotation: KOG4444 Peroxisomal assembly protein PEX3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 656 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 328 to 354 (27 residues), see Phobius details PF04882: Peroxin-3" amino acids 15 to 644 (630 residues), 395 bits, see alignment E=2.9e-122

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (656 amino acids)

>mRNA_3186 KOG4444 Peroxisomal assembly protein PEX3 (Rhodosporidium toruloides IFO0880)
MFSSLSLPTILSSTRPRRFITYTTATLGTAYIAGKWALGRVLEGAERGRREGWGREDLAR
RFNLNIQDSQFTVLALLPTLSQAVVGEMDVEGLTGELGERARREREERVRAEEERRRREE
EEDERARAKAAEEEVAKQSLPNGDANEMHGTTSISAPLTSTTSLGQPLHSPLLPMLNNHA
PALNPSAPVFHPRSPSPPHPTEAAEVEPSTVSLAQREQEGGEMGASWAEVVKRDVPEHAE
VAEEKEKREERTEEQAVANGDAQKEEKREDKGYEVDGSAEAEGEKVEVNGVGDDHTLEEK
QELATEQEDAKPAVPEKSKAELWNSIKLLSFTRLFTSIYLLVLLSLQTHVQLALLGRSAY
IESLLSTLPPRSPSPSSSARLLPESPSNPPPALADDAAQDDDLESALYAAKSLPPTPAEA
RKDLERKYLTFSWWLLHEGWKVVWRRVEGAVEEVVGPMGLKTPLVYGELGALFAQIRRRI
EQDADGKLFDFSPALHPPTQDLEIQTLIAGGSYTPPSSSSPTHLSADPITPSLRSLLNET
SDALDSSDAALVRALSLDKLFSLALEKVEVAFRSSGGERGARFEDVTEKQARLASLLPVL
TRLSAAKGDAQGAVLASGVNGNEWVEALEDVRELREFAAVLYGSWDRDNFRASCVL