Protein Info for mRNA_3210 in Rhodosporidium toruloides IFO0880

Name: 11578
Annotation: K03512 POLL DNA polymerase lambda

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1020 PF14716: HHH_8" amino acids 689 to 755 (67 residues), 54.5 bits, see alignment 2.5e-18 PF10391: DNA_pol_lambd_f" amino acids 775 to 824 (50 residues), 46.3 bits, see alignment 6.2e-16 PF14792: DNA_pol_B_palm" amino acids 827 to 939 (113 residues), 84.7 bits, see alignment E=1.1e-27 PF14791: DNA_pol_B_thumb" amino acids 946 to 1018 (73 residues), 70.1 bits, see alignment 3e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1020 amino acids)

>mRNA_3210 K03512 POLL DNA polymerase lambda (Rhodosporidium toruloides IFO0880)
MNRKPVPLSEFALLSDLELTFEERLARLEKAVGPHPLFKPINIESDSEDDEPAPPVRKGI
EREDGRLAGKKRMRDGQGQAQDARKEAEKAIEALEPPKKRQATSSSRQPASKPVQPAQPA
KPPRPKPTEVLVLDELSDGPVASTSKLPAASPTKTRSPPVTSSPSASPPVVDVLSSDSDS
DGYAKGSEAVDARVSKVRGISKAITPRASRSSVVDVSLVAGRTGTASARTRKKPRLSLEQ
ALTEARKIKGDKLAEQFKTVSDFIDYLEQFSPQLAESKKILAGCRIVFVNTDHWRRSTQT
VVVRATASAAPRNRFDQALRTNMSVAAKNGATLVRPEDFVPPPYEITGEPFDLERAEAEG
WTTHIIPLVPQGQRAPTYKEIIACLGPDNAGITRDDLGPFVQVVGFPWITKCIDVKGKAS
EWPYVLKGDFRQSEAEAEKEEKVRQVVKERERARKKQAKLEAAKQKKLGAKGKGQEQEDT
DVEESDGSDGHMDGVSPLGPEDWPEGEAPPAGYFDQATSQSTLSSLPPRQKKAKTPTTAQ
VGGGGSLEEEDVEMSDPIEDADLTRKMLGQSSSPAAQESPKGKGKAKAKAKVEKRVVPKG
LEDELAMVDKYGLDDIDEFIEKGTVDPSPVSFDDDECMILSNRVDSFSTEEENSDEEKEE
FNPRKRVQRNHRYACDNPEENRTTRNGPNEPVAFQLEKLADLQSTTTEKDQFRQRSYKQA
ANKLRSCPTKVTRFDQLVKLRGIGDKMANKIIEILRTGTHRRLTTFQTEREKTVKLFCGI
YGVGQAKAADLYDKGARSVEMIRRDPARFGAELLHVGLKYYEDLLERIPRDEVTELYGHA
KRIAYKIDPKLQVWCMGSYRRGAETCGDIDLIITRDPSDGKTHEGAVQKLWKGLVAEKMV
RHELTVPEDWRSLDALVHGLIRLPKPGAKMRRIDVLGVPFDEIPAAMIYFTGNDYFNRSI
RLKARRHGYRLNQRGLYKDVARDRKGIKLTEGVPVPGIKHERDIFRVLKVPYCEPEQRLP