Protein Info for mRNA_3214 in Rhodosporidium toruloides IFO0880

Name: 11582
Annotation: KOG3989 Beta-2-glycoprotein I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 49 to 73 (25 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 158 to 176 (19 residues), see Phobius details amino acids 196 to 213 (18 residues), see Phobius details PF04750: Far-17a_AIG1" amino acids 13 to 217 (205 residues), 135.3 bits, see alignment E=9.3e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (246 amino acids)

>mRNA_3214 KOG3989 Beta-2-glycoprotein I (Rhodosporidium toruloides IFO0880)
MAFPHTIPRSPFAFVLHLVAFASISWSFNELWKPSPMSDFMESSYGGHWQYLTILSLAIA
WLTFLFSLLYDVLPLSLFARLKTSVAILAVPVEGLVGLLYWTLTVVNPALLNPSLGEGKE
PFRIPFWLDVSLHGLPAVFLWLDFLLFSPPFPTRARPALLSSLAAAAYVLWLEHAAARNG
RYAYPMLDEWTPVQRSIFYVLQIPVLIGLYKLANGIHRLVRGEPDVRNEAKHVERAERKV
GAKKGQ