Protein Info for mRNA_3215 in Rhodosporidium toruloides IFO0880

Name: 11583
Annotation: K17103 CHO1, pssA CDP-diacylglycerol---serine O-phosphatidyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 97 to 121 (25 residues), see Phobius details amino acids 127 to 144 (18 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 190 to 213 (24 residues), see Phobius details amino acids 225 to 244 (20 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details PF01066: CDP-OH_P_transf" amino acids 98 to 167 (70 residues), 42.9 bits, see alignment E=3.5e-15 TIGR00473: CDP-diacylglycerol-serine O-phosphatidyltransferase" amino acids 102 to 236 (135 residues), 108.7 bits, see alignment E=1.5e-35

Best Hits

Predicted SEED Role

"CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 2.7.8.8)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.8.8

Use Curated BLAST to search for 2.7.8.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>mRNA_3215 K17103 CHO1, pssA CDP-diacylglycerol---serine O-phosphatidyltransferase (Rhodosporidium toruloides IFO0880)
MPGTAADLTVPPVTGSPAQASSKAAAPIDNPPAAVAKALANRRESATLEEAQKLAAMKDG
ELTKSQKAQKEKAVEAVKLREFVQDDRHFSLVRNFRLADIVTLGNGFCGALSLFSSAKYL
ISHDQTYIWHALTYPLAGFIFDALDGKVARWRRESSMLGQELDSLADSISFGVAPAFLAF
TLGLRTPLDTLFLTLFICAGIARLARFNATVALIPKDTTGKSKYFEGLPIPSSLILVALM
AVSVKRGKFEGVFGQGDGLPLGLVRWAKEKLGVSVHWEAVIFAGWAAAMISKTLRIPKL