Protein Info for mRNA_3227 in Rhodosporidium toruloides IFO0880

Name: 11595
Annotation: K12854 SNRNP200, BRR2 pre-mRNA-splicing helicase BRR2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2195 PF18149: Helicase_PWI" amino acids 301 to 407 (107 residues), 114.2 bits, see alignment 1.1e-36 PF00270: DEAD" amino acids 525 to 701 (177 residues), 91.7 bits, see alignment E=1.5e-29 amino acids 1372 to 1532 (161 residues), 59.1 bits, see alignment 1.5e-19 PF04851: ResIII" amino acids 537 to 699 (163 residues), 60.3 bits, see alignment 7.5e-20 PF00271: Helicase_C" amino acids 751 to 901 (151 residues), 30.4 bits, see alignment 1.3e-10 PF02889: Sec63" amino acids 1025 to 1327 (303 residues), 305.8 bits, see alignment E=6.5e-95 amino acids 1861 to 2172 (312 residues), 225.8 bits, see alignment E=1.7e-70

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2195 amino acids)

>mRNA_3227 K12854 SNRNP200, BRR2 pre-mRNA-splicing helicase BRR2 (Rhodosporidium toruloides IFO0880)
MPPNPSAYAGYQYHAMSTLVTTADRPRHRENEPTGEAESLVGRINPKEMGARAFREDLNV
EERRKKADKERERRERKEIEGGARKSGRSTVAGGMRYGDVLEATQDLEGLDYRPRTSETR
AVYELILSLVHTFLGDTPPAMVRSAADMILGYLKDDSLKDLDKKREVESLLSMPVPNEKF
AELTALGKKITDYGDEEDTGKGAAEDEDADAGKIDDDVGVAVVFEEEEEDEDQEDGEDFE
VRDEDTDEDEDERVEGPTGTGGGVDDDEMAKGADMDGDGDTVLVGGEGAPSARSKRGATK
DGQVPAREIDGFWLQRLFASSYPDPIEAAQKTEQAMSLLSSEGNTRDVENSLMDLTDYDK
FELVSTLVANREKIVWCTKLARSNDDEKMDVEVAMREKGVGWILKELRGETGKSRTNGDA
MDVDVATKPATLGPAKGTLKPGEAAPPPRKVLDLESMAFAQGGRLMSNKKCKLPEGSFKR
SKKGYEEIHVPAPKPAPLKDGELVPVSSMPQWAQEAFKGNPTLNRVQSRLFPVAFGTDEP
LLLCAPTGAGKTNVAMLTILNELAKHRNEATGEFDFSAFKIVYVAPMKALVQEMVGNFTK
RLSPYGVVVNELTGDRQLTKQQIAETQIIVTTPEKWDVITRKSTDTSYTNLVSLIIIDEI
HLLHDERGPVLESIVARTIRRMEQTHNYVRLVGLSATLPNFKDVARFLKVDPDKGLFYFD
SSYRPCPLKQEFIGVTEKKAIKRYQVTNEICYEKVLEHAGKDQVIIFVHSRKETAKTARF
LRDAAVENETITQFLRADPATREILTTEAESVTDPNLKDLLPFGFAIHHAGMNRVDRTLV
EDLFGDGRIQVLVSTATLAWGVNLPAHVVIIKGTQIYNPEKGRWVELSSQDVLQMLGRAG
RPQYDTFGEGIIITNHSELQYYLSMMNQQLPIESQFVSKLADNLNAEIVLGTVRNRDEAV
QWLGYTYLYVRMLGTPSLYSVDPNYAEDDPLLEQKRSDIVHTAAVLLEKSGLVRYDRKTG
VFHSNELGRIASGYYVTHNSMGVYNQHLKSASGFIELFRIFSLSEEFKNVPVRPEEKLEL
AKLLERVPIPVKESVDDPSAKINVLLQAYISQLKLDGFALVADMVYVTQSAGRILRAMFE
ICLKRGWAALTHKALALCQMVEKRMWSTMTPLRQFKGVPLDVVRRAERKEFPWYRYFDLE
PAELGELIGEPKAGRLVHRLVHQFPKLELQAHVQPITRSLLRVELTITPDFQWEEKVHGG
AESFWVLVEDVDGEVILFHDQFLLRQRYAEQDHYVTFTVPMLDPLPPNYFISVVSDRWLH
AETRLPLSFKHLILPEKFPPPTTLLDLQPLPVSALHNREFQALYSDIEAFNKIQTQVFQA
LYTTNDNVFVGAPTGSGKTICAEFALLRLWSQAEPRRAVCIEPFQEIVDARVAEWRAKFG
KLQGGKEVVALTGETSADLRLLDKGDLIVCTPTQWDVLSRRWKQRKNVQTVGLVIADELQ
LIGGEIGPTYEVILSRTRYVAAQTENPTRIVAFGVSLANARDLGEWLGCTAQTIFNFSPG
ARPLPMEVHLQSFNVPHFPSLMIQMAKPTYLAITEYANDRPVICFVSSRRQCRATADDIL
TYCLADQEESRFLNVEPSELAPHLEHVQDAGLRATLEHGVGFYHEALSKQDKRIVEMLYN
SGAIQVVVASKDVAWSMPLTAYMVVMMGVQSFEGKEHRYVDYPFTDVLQMMGRACRPEHD
SSSRCVLMCQQASLRPVRKDFFKKFLNEGLPIESHLHLSLHDHFNAEIVTKTIENKQDAV
DWLTWTWMYRRLVANPNYYNMQGTTHRHLSDHLSELVESTLADLQNSKAITVEDEMDVSA
LNLGMIAAYYNINYVTMDIFSMSLTEKTKLKGLLEIVSSAAEFENVPIRHHEDQLLRKVY
DRVPVKLANVDYESPHFKVNVLLQAHFSRLTLPADLAADQAQILPKVITLLSACVDVAAS
SGYLNAVGAMELAQCVTQATWDSDSPLKQIPHFSSEVIQRCQAANVNSVYDLLELEDTDR
DKILQFTPRQMRDVAAFVNRYPSVEVTYDIEDQDKLSAGEPIVVNVHLEREADEDEEIDT
TVIAPFFPGRKTEQQYLVLAERSTKQLHAVKKVTVNRRLSTKLEMTLSKGSHDLVLLLIC
DSYLGCDQEFELNDIKVAEAAESDDDSDDDEMDED