Protein Info for mRNA_3230 in Rhodosporidium toruloides IFO0880

Name: 11598
Annotation: HMMPfam-Region of unknown function (DUF2417)-PF10329

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 717 transmembrane" amino acids 43 to 62 (20 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 233 to 254 (22 residues), see Phobius details amino acids 265 to 286 (22 residues), see Phobius details amino acids 322 to 347 (26 residues), see Phobius details PF10329: DUF2417" amino acids 120 to 367 (248 residues), 37.8 bits, see alignment E=7.3e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (717 amino acids)

>mRNA_3230 HMMPfam-Region of unknown function (DUF2417)-PF10329 (Rhodosporidium toruloides IFO0880)
MCRSACLSQRTGLSQSTLQRPADVRLAREFTSQPARDRFDIPFSLHSMTLLRLLLLARFP
LLGSYSMAQRKLGGSGAPHDSFDDAIEHPHPRSASSSSARRSADQAAAADDLADSRGANE
RTALLGSTTSRDYATEARRDRRALAEAGHPEAEGRRRPWSLRIDFAVALLLLFANGYFWT
MSMAGVRGQFIANTALPKHAGSMGLPVLISFLACATNTASLLAFAVPHESPMLAFYTSIL
TAIFALTTLIISVSVTQLRVVEGPLTFIVLALAIVSALHAALSAALTDRYAPILDPPEEL
DPDYEPETGCWSSTKHGLRSCLGFLGISLPIAAAHIVILVGFILITINAIVRSVDASVEQ
PGQRWKVQPWLWQRRNFPELGHGFFQPKGREYRVHLSCRGIGLDDPPQFTASPSNTSSAL
QRPTVRRTIVVESERGIPGALDAEWVLKMLREGDLNSGDIEVRVCFWDRPGYGFSDASST
SSAPHIASALTQVLSVSGELARLEPPPSLEGADDAATVGPPSPLARSGLILVSRGESTAL
TSLFASIHPRIVHSFLYITPVSPSTHYLSPARSRFSAVPAFFTRTIPALWTELGIKRTWW
AIRGVPRRRRVLAREGERVNGLIERAGLQEAHELDLGREADGAKAWERRRGRYPTRPTVV
LGKSSVGDGGKKFVDDVVGEGLREWDREWKGGKSGCGSGGEAEQKCRDAVRSLMSLD