Protein Info for mRNA_3237 in Rhodosporidium toruloides IFO0880

Name: 11605
Annotation: K10357 MYO5 myosin V

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2058 transmembrane" amino acids 168 to 188 (21 residues), see Phobius details PF00063: Myosin_head" amino acids 141 to 852 (712 residues), 868.2 bits, see alignment E=8.2e-265 PF00612: IQ" amino acids 916 to 935 (20 residues), 13.8 bits, see alignment (E = 8.5e-06) PF01843: DIL" amino acids 1524 to 1623 (100 residues), 90.4 bits, see alignment 1.8e-29 PF00248: Aldo_ket_red" amino acids 1741 to 2036 (296 residues), 196.3 bits, see alignment E=1.4e-61

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2058 amino acids)

>mRNA_3237 K10357 MYO5 myosin V (Rhodosporidium toruloides IFO0880)
MPSLLDSYTPSTRCWFPDKDLGWVSGHVTNKQVDGEDVRVEFVDENGKVSLACLSFASRG
RRGSEHPLSAHDGRLAGVKELERNCRNGPELLGGRLAREKTALLRTGTRLGDHTVTTTLS
AIASNPDVLPPLRNPPVLEGTEDLTNLSHLNEPAVLHTILHRYSLRSIYTYSGIVLVAVN
PFTSLSGVYSPSVVQAYSSRLKGELEPHLFAIAEEAYRCMVGKEGEGGGNQTIVVSGESG
AGKTVSAKYIMRYFATVEDPNKPGKKKTTASGMTEVEEQILATNPIMEAFGNAKTTRNDN
SSRFGKYIEILFDGTQTIVGARIRTYLLERSRLVYQPETERNYHIFYQLLAGAPSSERKS
LGLDSASSFTYLNQGGPNALAIAGVDDAADFEATQKALSTVGITVERQWQIFKVLAALLH
LGNMEIRATRTDALLDDDDPSLERATSLLGIDKSEFKRWILKKQIVTRTDKIVTSLNAAQ
GNVVKDSVAKHIYASLFEWLVAVINESLTNEKVEGTVKNFIGVLDIYGFEHFKKNSFEQF
CINYANEKLQQEFNAHVFKLEQEEYMREQINWTFIDFADNQPTIDLIEGKLGVLSLLDEE
SRMPSGSDSNFVQKLHSTVGAKPENAKVFKKPRFGNNGFTIAHYALDVTYEADGFLEKNR
DTVPDEHLALLATTTNPFLKEVLDRAEATKAAVAEAEAAKAAEAAAANPAASKRMSVMGG
AGGARGGTARKPTLGSIFKASLISLMDTIDSTNAHYIRCIKPNEAKQAWEVEPPMVLGQL
RACGVLETIKISCAGYPTRWKFDEFADRYYMLVPSSQWQQTSDLRALCESILSSAISEPD
RYQVGLTKIFFRAGLLARFEQLRTSRLNELTTLIQKNVRRFLAMRDYSRVCKMILGVQAV
VRANAAKRRAEEARREKAAVMVQKVARGFMERQRFERAKRTVVALQAIARGQHLRANFVE
ERKNQAATQLQSMLRGAVARQQFLRDRRRVILLQSCVRRRQARGQLKALKAEARSATHFK
EVTYRLENKVVELTQTLQKRTTENRDLQSKLRALEQQLDSWQSKHDEADSRAKALQSELD
KPTIALAEFEALAQQKKELDARLEESLKQIADKDAEIERIHQDFLKQKTDLEAKHETLQK
SLATASDDSATVSGLRQELASLREQLSRQVAINNIAAKAPRQDANFTMATGQRSVAPGAP
ATNGVVENGSSPSLPAGVAAAAAAFSAPQGAKRRARRHSDGVMDGVSVSPIPEDGRWEKS
PRPVSMAFPQEPTVRRLAGGPGGKGYLPDVYDDPVEEIMRLLEEEEPLDEDVLFSLVRHL
KIPAPNLSSPPSPKEVLFPAHLISLVTNEMWKYGMMRESERFLANVMQTIQQHVMSYTGD
EVIVPGIFWLSNVHEILSFVCIAESDILQGIGPGGDGIGRDYEWDDYERLVTIVKHDLDS
LEYNIYHTWMQETKKRLHKMVIPALIESQSLPGFVTSDSGGRLFNRLVGGNQAPAFSMDD
ILNLLNKVWKSLKSYYVEVTVVQQAITELLKLIGVTSFNDLLMRRSFSSWKRAMQIQYNI
TRLEEWCKAHDMPEGTLQLEHLMQATKLLQLKKASLADIEIIFDVCWMLTPTQIQKLVAN
YYVADYENPISPEILRAVNARVVAGDKNDHLLLPPEVEEAGQYETPLPREVTGIETYIPS
YLVAPHIRRLVGVRTRAALQPLLPLHSYPRSSSAPIAPIHTSLRSMPIPSVTVGPVPLAK
VATGLMRLTWAPKHTPDEQAFELMKMAIDEGSTTFNSGYFYGTPPDVTANLKLISRFCEK
YPDYKDKFFLSVKGGITPQMKPNADIDFLRKQVTEVNEILKHRKMDLFEIARVDKETGPE
KSMQNLLTLRDEGHFKYIGISEASADTIRRSAAVGPIAAVELEYSPFATEIEKNGVLDAC
KELGIPIAAYSPLGAGFLGNNWKSKEDIPEGDMRRNFDKFSDEHFEHNMELVRKLTSIAE
KKGVTPAQLSIAWVGAQWEGISVLPGSTNPQRAKQCIEAANIAFTPEELADIRKVVDSFE
VKGVRYVKNEHVQSTLFG